{"abbreviation":"12DGR120tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr120_p --> 12dgr120_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR140tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr140_p --> 12dgr140_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:0)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR141tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr141_p --> 12dgr141_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR160tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr160_p --> 12dgr160_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:0)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR161tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr161_p --> 12dgr161_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:1)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR180tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr180_p --> 12dgr180_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:0)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12DGR181tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr181_p --> 12dgr181_c","officialName":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:1)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12PPDRtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"12ppd__R_e <==> 12ppd__R_p","officialName":"(R)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"12PPDRtpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"12ppd__R_p <==> 12ppd__R_c","officialName":"(R)-Propane-1,2-diol facilitated transport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"12PPDStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"12ppd__S_e <==> 12ppd__S_p","officialName":"(S)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"12PPDStpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"12ppd__S_p <==> 12ppd__S_c","officialName":"(S)-Propane-1,2-diol facilitated transport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"14GLUCANabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"14glucan_p + atp_c + h2o_c --> 14glucan_c + adp_c + h_c + pi_c","officialName":"1,4-alpha-D-glucan transport via ABC system (periplasm)","geneAssociation":"b4034 and b4033 and b4032 and b4035","subsystem":"Transport, Inner Membrane"} {"abbreviation":"14GLUCANtexi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"14glucan_e --> 14glucan_p","officialName":"1,4-alpha-D-glucan transport via diffusion (extracellular to periplasm) irreversible","geneAssociation":"b4036","subsystem":"Transport, Outer Membrane"} {"abbreviation":"23CAMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"23camp_e <==> 23camp_p","officialName":"23cAMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"23CCMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"23ccmp_e <==> 23ccmp_p","officialName":"23cCMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"23CGMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"23cgmp_e <==> 23cgmp_p","officialName":"23cGMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"23CUMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"23cump_e <==> 23cump_p","officialName":"23cUMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"23DAPPAt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23dappa_p + h_p --> h_c + 23dappa_c","officialName":"2,3-diaminopropionate transport in via proton symport","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"23DAPPAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"23dappa_e <==> 23dappa_p","officialName":"2,3-diaminopropionate transport via diffusion","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"23PDE2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23cump_p + h2o_p --> h_p + 3ump_p","officialName":"2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"23PDE4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23ccmp_p + h2o_p --> h_p + 3cmp_p","officialName":"2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"23PDE7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23camp_p + h2o_p --> h_p + 3amp_p","officialName":"2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"23PDE9pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23cgmp_p + h2o_p --> h_p + 3gmp_p","officialName":"2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"26DAHtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"26dap__M_e <==> 26dap__M_p","officialName":"Meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"2AGPA120tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2ddecg3p_p --> 2ddecg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA140tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2tdecg3p_p --> 2tdecg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA141tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2tdec7eg3p_p --> 2tdec7eg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA160tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2hdecg3p_p --> 2hdecg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA161tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2hdec9eg3p_p --> 2hdec9eg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA180tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2odecg3p_p --> 2odecg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPA181tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2odec11eg3p_p --> 2odec11eg3p_c","officialName":"2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE120tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe120_p --> 2agpe120_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE140tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe140_p --> 2agpe140_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE141tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe141_p --> 2agpe141_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE160tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe160_p --> 2agpe160_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE161tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe161_p --> 2agpe161_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE180tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe180_p --> 2agpe180_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPE181tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpe181_p --> 2agpe181_c","officialName":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPEAT120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe120_c + ddca_c --> amp_c + pe120_c + ppi_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe140_c + ttdca_c --> amp_c + ppi_c + pe140_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe141_c + ttdcea_c --> amp_c + ppi_c + pe141_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe160_c + hdca_c --> amp_c + ppi_c + pe160_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe161_c + hdcea_c --> amp_c + ppi_c + pe161_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe180_c + ocdca_c --> amp_c + ppi_c + pe180_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPEAT181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2agpe181_c + ocdcea_c --> amp_c + ppi_c + pe181_c","officialName":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPG120tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg120_p --> 2agpg120_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG140tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg140_p --> 2agpg140_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG141tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg141_p --> 2agpg141_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG160tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg160_p --> 2agpg160_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG161tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg161_p --> 2agpg161_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG180tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg180_p --> 2agpg180_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPG181tipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg181_p --> 2agpg181_c","officialName":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1) transporter via facilitated diffusion (periplasm)","geneAssociation":"b2835","subsystem":"Transport, Inner Membrane"} {"abbreviation":"2AGPGAT120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ddca_c + 2agpg120_c --> amp_c + ppi_c + pg120_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ttdca_c + 2agpg140_c --> amp_c + ppi_c + pg140_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ttdcea_c + 2agpg141_c --> amp_c + ppi_c + pg141_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + hdca_c + 2agpg160_c --> amp_c + ppi_c + pg160_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + hdcea_c + 2agpg161_c --> amp_c + ppi_c + pg161_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ocdca_c + 2agpg180_c --> amp_c + ppi_c + pg180_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:0)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2AGPGAT181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ocdcea_c + 2agpg181_c --> amp_c + ppi_c + pg181_c","officialName":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:1)","geneAssociation":"b2836","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"2DGULRGx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 2dhguln_c + nadh_c --> glcn_c + nad_c","officialName":"2-Dehydro-L-gulonate reductase to gluconate (NADH)","geneAssociation":"b3553","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"2DGULRGy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 2dhguln_c + nadph_c --> glcn_c + nadp_c","officialName":"2-Dehydro-L-gulonate reductase to gluconate (NADPH)","geneAssociation":"b3553","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"2DGULRx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 2dhguln_c + nadh_c --> nad_c + idon__L_c","officialName":"2-dehydro-L-gulonate reductase (NADH)","geneAssociation":"b3553","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"2DGULRy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 2dhguln_c + nadph_c --> nadp_c + idon__L_c","officialName":"2-dehydro-L-gulonate reductase (NADPH)","geneAssociation":"b3553","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"2MAHMP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2mahmp_c --> h_c + pi_c + 4ampm_c","officialName":"2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphatase","geneAssociation":"b0446 or b1134","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"34dhpactex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"34dhpac_e <==> 34dhpac_p","officialName":"Dihydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"3AMACHYD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + 3amac_c --> msa_c + nh4_c","officialName":"3-aminoacrylate hydrolase","geneAssociation":"b1009","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"3AMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3amp_e <==> 3amp_p","officialName":"3AMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"3CMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3cmp_e <==> 3cmp_p","officialName":"3CMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"3GMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3gmp_e <==> 3gmp_p","officialName":"3GMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"3HAD100","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hdecACP_c --> h2o_c + tdec2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hddecACP_c --> h2o_c + tddec2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)","geneAssociation":"b0180 or b0954","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD121","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hcddec5eACP_c --> h2o_c + t3c5ddeceACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)","geneAssociation":"b0180 or b0954","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hmrsACP_c --> h2o_c + tmrs2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hcmrs7eACP_c --> h2o_c + t3c7mrseACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hpalmACP_c --> h2o_c + tpalm2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hcpalm9eACP_c --> h2o_c + t3c9palmeACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)","geneAssociation":"b0180 or b0954","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hoctaACP_c --> h2o_c + toctd2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hcvac11eACP_c --> h2o_c + t3c11vaceACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD40","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3haACP_c --> h2o_c + but2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD60","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hhexACP_c --> h2o_c + thex2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HAD80","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3hoctACP_c --> h2o_c + toct2eACP_c","officialName":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)","geneAssociation":"b0954 or b0180","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3HCINNMH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + 3hcinnm_c + o2_c --> h2o_c + nad_c + dhcinnm_c","officialName":"3-hydroxycinnamate hydroxylase","geneAssociation":"b0347","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"3HPPPNH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + o2_c + 3hpppn_c --> h2o_c + nad_c + dhpppn_c","officialName":"3-(3-hydroxy-phenyl)propionate hydroxylase","geneAssociation":"b0347","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"3HPPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3hpp_e <==> 3hpp_p","officialName":"3-hydroxypropionate transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b0929 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"3HPPtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 3hpp_c --> h_p + 3hpp_p","officialName":"3-hydroxypropionate transport via proton symport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"3KGK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 3dhguln_c --> adp_c + h_c + 3dhgulnp_c","officialName":"3-keto-L-gulonate kinase","geneAssociation":"b3580","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"3NTD2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3ump_p + h2o_p --> pi_p + uri_p","officialName":"3'-nucleotidase (UMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"3NTD4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 3cmp_p --> pi_p + cytd_p","officialName":"3'-nucleotidase (CMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"3NTD7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 3amp_p --> pi_p + adn_p","officialName":"3'-nucleotidase (AMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"3NTD9pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 3gmp_p --> pi_p + gsn_p","officialName":"3'-nucleotidase (GMP) (periplasm)","geneAssociation":"b4213","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"3OAR100","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3odecACP_c <==> nadp_c + 3hdecACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR120","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3oddecACP_c <==> nadp_c + 3hddecACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR121","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3ocddec5eACP_c --> nadp_c + 3hcddec5eACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR140","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3omrsACP_c <==> nadp_c + 3hmrsACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3ocmrs7eACP_c --> nadp_c + 3hcmrs7eACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR160","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3opalmACP_c <==> nadp_c + 3hpalmACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] 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nadph_c + actACP_c <==> nadp_c + 3haACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR60","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3ohexACP_c <==> nadp_c + 3hhexACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAR80","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 3ooctACP_c <==> nadp_c + 3hoctACP_c","officialName":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0)","geneAssociation":"b1093","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS100","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + ocACP_c --> 3odecACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C10:0)","geneAssociation":"b2323 or b1095","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + dcaACP_c --> 3oddecACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:0)","geneAssociation":"b1095 or b2323","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS121","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + cdec3eACP_c --> 3ocddec5eACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1)","geneAssociation":"b2323","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + ddcaACP_c --> 3omrsACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)","geneAssociation":"b2323 or b1095","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + cddec5eACP_c --> 3ocmrs7eACP_c + ACP_c + 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{"abbreviation":"3OAS181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + hdeACP_c --> 3ocvac11eACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1)","geneAssociation":"b1095","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS60","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + butACP_c --> 3ohexACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)","geneAssociation":"b1095 or b2323","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OAS80","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + malACP_c + hexACP_c --> 3ooctACP_c + ACP_c + co2_c","officialName":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0)","geneAssociation":"b2323 or b1095","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"3OXCOAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"coa_c + oxadpcoa_c --> accoa_c + succoa_c","officialName":"3-oxoadipyl-CoA 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{"abbreviation":"42A12BOOXpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + dopa_p + o2_p --> 34dhpac_p + h2o2_p + nh4_p","officialName":"4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)","geneAssociation":"b1386","subsystem":"Nitrogen Metabolism"} {"abbreviation":"4HOXPACDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"4hoxpacd_e <==> 4hoxpacd_p","officialName":"4-hydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"4HTHRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + phthr_c --> pi_c + 4hthr_c","officialName":"4-Hydroxy-L-threonine synthase","geneAssociation":"b0004","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"4PCP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + LalaDgluMdapDala_c --> LalaDgluMdap_c + ala__D_c","officialName":"Tetrapeptide L,D-carboxypeptidase","geneAssociation":"b1192","subsystem":"Murein Recycling"} {"abbreviation":"4PCPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + LalaDgluMdapDala_p --> LalaDgluMdap_p + ala__D_p","officialName":"Tetrapeptide L,D-carboxypeptidase (periplasm)","geneAssociation":"","subsystem":"Murein Recycling"} {"abbreviation":"4PEPTabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + LalaDgluMdapDala_p --> adp_c + h_c + pi_c + LalaDgluMdapDala_c","officialName":"Tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)","geneAssociation":"b1243 and b1244 and b1245 and b1246 and b1247","subsystem":"Murein Recycling"} {"abbreviation":"4PEPTtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"LalaDgluMdapDala_e <==> LalaDgluMdapDala_p","officialName":"LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"5DGLCNR","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 5dglcn_c <==> glcn_c + nadp_c","officialName":"5-dehydro-D-gluconate reductase","geneAssociation":"b4266","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"5DGLCNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + 5dglcn_p <==> h_c + 5dglcn_c","officialName":"5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)","geneAssociation":"b4265","subsystem":"Transport, Inner Membrane"} {"abbreviation":"5DGLCNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"5dglcn_e <==> 5dglcn_p","officialName":"5-Dehydro-D-gluconate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b2215 or b1377","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"5DOAN","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dad_5_c --> 5drib_c + ade_c","officialName":"5'-deoxyadenosine nuclosidase","geneAssociation":"b0159","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"5MTRtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"5mtr_e <==> 5mtr_p","officialName":"5-Methylthio-D-ribose transport via proton diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b0929 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"5MTRtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 5mtr_c --> h_p + 5mtr_p","officialName":"5-Methylthio-D-ribose transport via proton symport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"A5PISO","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ru5p__D_c <==> ara5p_c","officialName":"Arabinose-5-phosphate isomerase","geneAssociation":"b3197 or b2708","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"AACPS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ttdca_c + ACP_c --> amp_c + ppi_c + myrsACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C14:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ttdcea_c + ACP_c --> amp_c + ppi_c + tdeACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C14:1)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + hdca_c + ACP_c --> amp_c + ppi_c + palmACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C16:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + hdcea_c + ACP_c --> amp_c + ppi_c + hdeACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C16:1)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS5","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ocdcea_c + ACP_c --> amp_c + ppi_c + octeACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C18:1)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS6","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ocdca_c + ACP_c --> amp_c + ppi_c + ocdcaACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C18:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS7","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ddca_c + ACP_c --> amp_c + ppi_c + ddcaACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C12:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS8","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ACP_c + dca_c --> amp_c + ppi_c + dcaACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C10:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACPS9","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ACP_c + octa_c --> amp_c + ppi_c + ocACP_c","officialName":"Acyl-[acyl-carrier-protein] synthetase (n-C8:0)","geneAssociation":"b2836 and b1094","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AACTOOR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + o2_c + aact_c --> nh4_c + h2o2_c + mthgxl_c","officialName":"Aminoacetone:oxygen oxidoreductase(deaminating)(flavin-containing)","geneAssociation":"","subsystem":"Methylglyoxal Metabolism"} {"abbreviation":"AADDGT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dtdp4aaddg_c + unagamu_c --> h_c + dtdp_c + unagamuf_c","officialName":"DTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase","geneAssociation":"b4481","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"AAMYL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"14glucan_c --> malthx_c","officialName":"Alpha-amylase","geneAssociation":"b1927","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"AAMYLpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"14glucan_p --> malthx_p","officialName":"Alpha-amylase (periplasm)","geneAssociation":"b3571","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"AB6PGH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + arbt6p_c --> g6p_c + hqn_c","officialName":"Arbutin 6-phosphate glucohydrolase","geneAssociation":"b2901","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"ABTA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4abut_c + akg_c --> glu__L_c + sucsal_c","officialName":"4-aminobutyrate transaminase","geneAssociation":"b2662 or b1302","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"ABUTD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + 4abutn_c --> (2) h_c + 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{"abbreviation":"ACACT1r","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) accoa_c <==> coa_c + aacoa_c","officialName":"Acetyl-CoA C-acetyltransferase","geneAssociation":"b2224 or b2342 or b3845","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACACT2r","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + btcoa_c <==> coa_c + 3ohcoa_c","officialName":"Acetyl-CoA C-acyltransferase (butanoyl-CoA) (r)","geneAssociation":"b2342 or b3845","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACACT3r","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + hxcoa_c <==> coa_c + 3oocoa_c","officialName":"Acetyl-CoA C-acyltransferase (hexanoyl-CoA) (r)","geneAssociation":"b2342 or b3845","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACACT4r","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + occoa_c <==> coa_c + 3odcoa_c","officialName":"Acetyl-CoA C-acyltransferase (octanoyl-CoA) (r)","geneAssociation":"b2342 or 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{"abbreviation":"ACCOAC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + accoa_c + hco3_c --> adp_c + h_c + pi_c + malcoa_c","officialName":"Acetyl-CoA carboxylase","geneAssociation":"b0185 and b2316 and b3255 and b3256","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACCOAL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + coa_c + ppa_c --> adp_c + pi_c + ppcoa_c","officialName":"Acetate-CoA ligase (ADP-forming)","geneAssociation":"b4069","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"ACGAL1PPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + acgal1p_p --> pi_p + acgal_p","officialName":"N-acetyl-D-galactosamine 1-phosphatase (periplasm)","geneAssociation":"","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"ACGAL1Ptex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"acgal1p_e <==> acgal1p_p","officialName":"N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to 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{"abbreviation":"ACGAMK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + acgam_c --> adp_c + h_c + acgam6p_c","officialName":"N-acetylglucosamine kinase","geneAssociation":"b1119","subsystem":"Murein Recycling"} {"abbreviation":"ACGAMT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"uacgam_c + udcpp_c --> ump_c + unaga_c","officialName":"UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase","geneAssociation":"b3784","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"ACGAptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"acgam_p + pep_c --> acgam6p_c + pyr_c","officialName":"N-Acetyl-D-glucosamine transport via PEP:Pyr PTS (periplasm)","geneAssociation":"(b2417 and b1101 and b2415 and b2416) or (b0679 and b2415 and b2416)","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ACGAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"acgam_e <==> acgam_p","officialName":"N-Acetyl-D-glucosamine transport via 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b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ACNAMt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + acnam_p --> h_c + acnam_c","officialName":"N-acetylneuraminate proton symport (periplasm)","geneAssociation":"b3224","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ACNAMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"acnam_e <==> acnam_p","officialName":"N-acetylneuraminate transport via diffusion (extracellular to periplasm)","geneAssociation":"b4311 or b0929 or b2215","subsystem":"Transport, Outer Membrane"} {"abbreviation":"ACNML","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"acnam_c --> pyr_c + acmana_c","officialName":"N-Acetylneuraminate lyase","geneAssociation":"b3225","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"ACOAD1f","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"btcoa_c + fad_c <==> b2coa_c + fadh2_c","officialName":"Acyl-CoA dehydrogenase 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(dodecanoyl-CoA)","geneAssociation":"b0221","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACOAD6f","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tdcoa_c + fad_c <==> fadh2_c + td2coa_c","officialName":"Acyl-CoA dehydrogenase (tetradecanoyl-CoA)","geneAssociation":"b0221","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACOAD7f","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pmtcoa_c + fad_c <==> fadh2_c + hdd2coa_c","officialName":"Acyl-CoA dehydrogenase (hexadecanoyl-CoA)","geneAssociation":"b0221","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACOAD8f","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"fad_c + stcoa_c <==> fadh2_c + od2coa_c","officialName":"Acyl-CoA dehydrogenase (octadecanoyl-CoA)","geneAssociation":"b0221","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACOATA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ACP_c + accoa_c <==> coa_c + acACP_c","officialName":"Acetyl-CoA ACP transacylase","geneAssociation":"b1094 and b1091","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"ACODA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + acorn_c --> ac_c + orn_c","officialName":"Acetylornithine deacetylase","geneAssociation":"b3957","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"ACOLIPAabctex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + acolipa_p --> adp_c + h_c + pi_c + acolipa_e","officialName":"Arabinose modified core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)","geneAssociation":"b3200 and b3201 and b3199 and b4261 and b4262","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"ACONIs","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"acon_T_c <==> acon_C_c","officialName":"Aconitate isomerase (spontaneous)","geneAssociation":"s0001","subsystem":"Unassigned"} {"abbreviation":"ACONMT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"acon_T_c + 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b1090","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"ACPPAT161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pi_c + hdeACP_c --> ACP_c + hdceap_c","officialName":"Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1)","geneAssociation":"b1094 and b1090","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"ACPPAT180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pi_c + ocdcaACP_c --> ACP_c + ocdcap_c","officialName":"Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0)","geneAssociation":"b1094 and b1090","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"ACPPAT181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pi_c + octeACP_c --> ACP_c + ocdceap_c","officialName":"Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1)","geneAssociation":"b1094 and b1090","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"ACPS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"coa_c + apoACP_c --> h_c + ACP_c + pap_c","officialName":"Acyl-carrier protein synthase","geneAssociation":"b3475 or b2563","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ACS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + coa_c + ac_c --> amp_c + ppi_c + accoa_c","officialName":"Acetyl-CoA synthetase","geneAssociation":"b4069","subsystem":"Pyruvate Metabolism"} {"abbreviation":"ACSERtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"acser_e <==> acser_p","officialName":"O-Acetyl-L-serine transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ACSERtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"acser_c --> acser_p","officialName":"O-Acetyl-L-serine export via facilitated transport","geneAssociation":"b2578 or b1533","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ACt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ac_p <==> h_c + ac_c","officialName":"Acetate reversible transport via proton symport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ACt4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ac_p + na1_p --> ac_c + na1_c","officialName":"Na+/Acetate symport (periplasm)","geneAssociation":"b4067","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ACtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ac_e <==> ac_p","officialName":"Acetate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ADA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + adn_c --> nh4_c + ins_c","officialName":"Adenosine deaminase","geneAssociation":"b1623","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"ADCL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4adcho_c --> h_c + pyr_c + 4abz_c","officialName":"4-aminobenzoate synthase","geneAssociation":"b1096","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ADCS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"chor_c + gln__L_c --> glu__L_c + 4adcho_c","officialName":"4-amino-4-deoxychorismate synthase","geneAssociation":"b3360 and b1812","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ADD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + ade_c --> nh4_c + hxan_c","officialName":"Adenine deaminase","geneAssociation":"b3665","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"ADEt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ade_p <==> h_c + ade_c","officialName":"Adenine transport via proton symport (reversible) (periplasm)","geneAssociation":"b3654 or b3714","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ADEtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ade_e <==> ade_p","officialName":"Adenine 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{"abbreviation":"ADNt2pp_copy2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + adn_p <==> h_c + adn_c","officialName":"Adenosine transport in via proton symport (periplasm)","geneAssociation":"b2406","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ADNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"adn_e <==> adn_p","officialName":"Adenosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0411","subsystem":"Transport, Outer Membrane"} {"abbreviation":"ADOCBIK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + adocbi_c --> adp_c + h_c + adocbip_c","officialName":"Adenosyl cobinamide kinase","geneAssociation":"b1993","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ADOCBLS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"agdpcbi_c + rdmbzi_c --> h_c + adocbl_c + gmp_c","officialName":"Adenosylcobalamin 5'-phosphate synthase","geneAssociation":"b1992","subsystem":"Cofactor and Prosthetic Group 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{"abbreviation":"ALPATE160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"alpp_p + pe160_p --> 2agpe160_p + lpp_p","officialName":"Apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm)","geneAssociation":"b0657 and b1677","subsystem":"Unassigned"} {"abbreviation":"ALPATG160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"alpp_p + pg160_p --> 2agpg160_p + lpp_p","officialName":"Apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm)","geneAssociation":"b0657 and b1677","subsystem":"Unassigned"} {"abbreviation":"ALR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + mthgxl_c --> nadp_c + acetol_c","officialName":"Aldose reductase (methylglyoxal)","geneAssociation":"b3012 or b0207 or b1781 or b3001","subsystem":"Methylglyoxal Metabolism"} {"abbreviation":"ALR4x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + acetol_c --> 12ppd__R_c + nad_c","officialName":"Aldose reductase 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(periplasm)","geneAssociation":"(b2310 and b2307 and b2306 and b2308) or (b0863 and b0860 and b0861 and b0864 and b0862)","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ARGt3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + arg__L_c --> h_c + arg__L_p","officialName":"L-arginine transport out via proton antiport (cytoplasm to periplasm)","geneAssociation":"b2923","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ARGtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"arg__L_e <==> arg__L_p","officialName":"L-arginine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ASAD","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + nadp_c + aspsa_c <==> h_c + nadph_c + 4pasp_c","officialName":"Aspartate-semialdehyde dehydrogenase","geneAssociation":"b3433","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"ASCBPL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ascb6p_c --> h_c + 3dhgulnp_c","officialName":"L-ascorbate 6-phosphate lactonase","geneAssociation":"b4192","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"ASCBptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + ascb__L_p --> pyr_c + ascb6p_c","officialName":"L-ascorbate transport via PEP:Pyr PTS (periplasm)","geneAssociation":"b2415 and b2416 and b4195 and b4194 and b4193","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASCBtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ascb__L_e <==> ascb__L_p","officialName":"L-ascorbate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ASNN","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + asn__L_c --> nh4_c + asp__L_c","officialName":"L-asparaginase","geneAssociation":"b1767 or b0828","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASNNpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + asn__L_p --> nh4_p + asp__L_p","officialName":"L-asparaginase","geneAssociation":"b2957","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASNS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + gln__L_c + asp__L_c --> h_c + amp_c + ppi_c + glu__L_c + asn__L_c","officialName":"Asparagine synthase (glutamine-hydrolysing)","geneAssociation":"b0674","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASNS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + nh4_c + asp__L_c --> h_c + amp_c + ppi_c + asn__L_c","officialName":"Asparagine synthetase","geneAssociation":"b3744","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASNTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + asn__L_c + trnaasn_c --> amp_c + ppi_c + asntrna_c","officialName":"Asparaginyl-tRNA synthetase","geneAssociation":"b0930","subsystem":"tRNA Charging"} {"abbreviation":"ASNabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + asn__L_p --> adp_c + h_c + pi_c + asn__L_c","officialName":"L-asparagine transport via ABC system (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + asn__L_p <==> h_c + asn__L_c","officialName":"L-asparagine reversible transport via proton symport (periplasm)","geneAssociation":"b1453","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"asn__L_e <==> asn__L_p","officialName":"L-asparagine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ASO3t8pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + aso3_c --> adp_c + h_c + pi_c + aso3_p","officialName":"Arsenite efflux via ATP hydrolysis (periplasm)","geneAssociation":"b3502","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASO3tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"aso3_e <==> aso3_p","officialName":"Arsenite transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ASP1DC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + asp__L_c --> co2_c + ala_B_c","officialName":"Aspartate 1-decarboxylase","geneAssociation":"b0131","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ASPCT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"asp__L_c + cbp_c --> h_c + pi_c + cbasp_c","officialName":"Aspartate carbamoyltransferase","geneAssociation":"(b4244 and b4245) or b4245","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"ASPK","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + asp__L_c <==> adp_c + 4pasp_c","officialName":"Aspartate kinase","geneAssociation":"b0002 or b3940 or b4024","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"ASPO3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"asp__L_c + q8_c --> h_c + iasp_c + q8h2_c","officialName":"L-aspartate oxidase","geneAssociation":"b2574","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ASPO4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"asp__L_c + mqn8_c --> h_c + mql8_c + iasp_c","officialName":"L-aspartate oxidase","geneAssociation":"b2574","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ASPO5","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fum_c + asp__L_c --> h_c + iasp_c + succ_c","officialName":"L-aspartate oxidase","geneAssociation":"b2574","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ASPO6","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + asp__L_c --> h_c + h2o2_c + iasp_c","officialName":"L-aspartate oxidase","geneAssociation":"b2574","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"ASPT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"asp__L_c --> nh4_c + fum_c","officialName":"L-aspartase","geneAssociation":"b4139","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASPTA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"akg_c + asp__L_c <==> glu__L_c + oaa_c","officialName":"Aspartate transaminase","geneAssociation":"b0928","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"ASPTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + asp__L_c + trnaasp_c --> amp_c + ppi_c + asptrna_c","officialName":"Aspartyl-tRNA synthetase","geneAssociation":"b1866","subsystem":"tRNA Charging"} {"abbreviation":"ASPabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + asp__L_p --> adp_c + h_c + pi_c + asp__L_c","officialName":"L-aspartate transport via ABC system (periplasm)","geneAssociation":"b0655 and b0654 and b0653 and b0652","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASPt2_2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_p + asp__L_p --> (2) h_c + asp__L_c","officialName":"Aspartate transport via proton symport (2 H) (periplasm)","geneAssociation":"b3528","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASPt2_3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(3) h_p + asp__L_p --> (3) h_c + asp__L_c","officialName":"L-asparate transport via proton symport (3 H) (periplasm)","geneAssociation":"b4138 or b4123","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASPt2pp_copy1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + asp__L_p --> h_c + asp__L_c","officialName":"L-aspartate transport in via proton symport (periplasm)","geneAssociation":"b4077","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASPt2pp_copy2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + asp__L_p <==> h_c + asp__L_c","officialName":"L-aspartate transport in via proton symport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"ASPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"asp__L_e <==> asp__L_p","officialName":"L-aspartate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ASR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"aso4_c + (2) gthrd_c --> h2o_c + aso3_c + gthox_c","officialName":"Arsenate reductase","geneAssociation":"b3503 and b1064","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"AST","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"succoa_c + arg__L_c --> h_c + coa_c + sucarg_c","officialName":"Arginine succinyltransferase","geneAssociation":"b1747","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"ATHRDHr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nadp_c + athr__L_c <==> h_c + nadph_c + 2aobut_c","officialName":"L-allo-threonine dehydrogenase","geneAssociation":"b1539","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"ATPHs","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + h_c --> nh4_c + itp_c","officialName":"ATP amine hydrolysis (spontaneous)","geneAssociation":"s0001","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"ATPM","lowbnd":3.15,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c --> adp_c + h_c + pi_c","officialName":"ATP maintenance requirement","geneAssociation":"","subsystem":"Biomass and maintenance functions"} {"abbreviation":"ATPPRT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + prpp_c --> ppi_c + prbatp_c","officialName":"ATP phosphoribosyltransferase","geneAssociation":"b2019","subsystem":"Histidine Metabolism"} {"abbreviation":"ATPS4rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"adp_c + pi_c + (4) h_p <==> atp_c + h2o_c + (3) h_c","officialName":"ATP synthase (four protons for one ATP) (periplasm)","geneAssociation":"((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735) and b3739) or ((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735))","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"BALAt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ala_B_p --> h_c + ala_B_c","officialName":"Beta-alanine transport in via proton symport (periplasm)","geneAssociation":"b4208","subsystem":"Transport, Inner Membrane"} {"abbreviation":"BALAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ala_B_e <==> ala_B_p","officialName":"Beta-alanine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"BETALDHx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + betald_c --> (2) h_c + nadh_c + glyb_c","officialName":"Betaine-aldehyde dehydrogenase","geneAssociation":"b0312","subsystem":"Unassigned"} {"abbreviation":"BETALDHy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nadp_c + betald_c --> (2) h_c + nadph_c + glyb_c","officialName":"Betaine-aldehyde dehydrogenase","geneAssociation":"b0312","subsystem":"Unassigned"} {"abbreviation":"BIOMASS_Ec_iJO1366_WT_53p95M","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(54.119975) atp_c + (48.752916) h2o_c + (0.012366) pe160_c + (0.009618) pe161_c + (0.004957) pe181_c + (0.005707) pg160_c + (0.004439) pg161_c + (0.002288) pg181_c + (0.001787) nad_c + (4.5e-05) nadh_c + (0.000112) nadp_c + (0.000335) nadph_c + (0.012379) nh4_c + (0.000279) accoa_c + (0.000168) coa_c + (9.8e-05) succoa_c + (0.255712) glu__L_c + (0.209121) gtp_c + (3.1e-05) malcoa_c + (0.000223) fad_c + (0.000223) amet_c + (0.000223) chor_c + (0.255712) gln__L_c + (0.000223) adocbl_c + (0.234232) asp__L_c + (0.03327) ptrc_c + (0.000223) 10fthf_c + (0.000223) thf_c + (0.499149) ala__L_c + (0.000223) pydx5p_c + (0.031798) pe160_p + (0.004892) pg160_p + (0.000223) 2dmmql8_c + (0.000223) mql8_c + (0.088988) cys__L_c + (0.595297) gly_c + (0.214798) pro__L_c + (0.006388) fe2_c + (0.000223) ribflv_c + (0.28742) arg__L_c + (0.234232) asn__L_c + (0.000223) q8h2_c + (0.000223) gthrd_c + (2.5e-05) 2fe2s_c + (0.000248) 4fe4s_c + (0.000223) 5mthf_c + (0.000116) bmocogdp_c + (2e-06) btn_c + (0.004952) ca2_c + (0.004952) cl_c + (0.002944) clpn160_p + (0.00229) clpn161_p + (0.00118) clpn181_p + (2.4e-05) cobalt2_c + (0.008151) colipa_e + (0.129799) ctp_c + (0.000674) cu2_c + (0.024805) datp_c + (0.025612) dctp_c + (0.025612) dgtp_c + (0.024805) dttp_c + (0.000223) enter_c + (0.007428) fe3_c + (0.154187) glycogen_c + (0.000223) hemeO_c + (0.092056) his__L_c + (0.282306) ile__L_c + (0.18569) k_c + (0.437778) leu__L_c + (3e-06) lipopb_c + (0.333448) lys__L_c + (0.149336) met__L_c + (0.008253) mg2_c + (0.000223) mlthf_c + (0.000658) mn2_c + (7e-06) mobd_c + (7e-06) mococdp_c + (7e-06) mocogdp_c + (0.001345) murein3p3p_p + (0.000605) murein3px4p_p + (0.005381) murein4p4p_p + (0.005448) murein4px4p_p + (0.000673) murein4px4px4p_p + (0.000307) ni2_c + (0.024732) pe161_p + (0.012747) pe181_p + (0.003805) pg161_p + (0.001961) pg181_p + (0.180021) phe__L_c + (0.000223) pheme_c + (0.209684) ser__L_c + (0.000223) sheme_c + (0.004126) so4_c + (0.006744) spmd_c + (0.000223) thmpp_c + (0.246506) thr__L_c + (0.055234) trp__L_c + (0.133993) tyr__L_c + (5.5e-05) udcpdp_c + (0.140101) utp_c + (0.411184) val__L_c + (0.000324) zn2_c --> (53.95) adp_c + (53.95) h_c + (53.945874) pi_c + (0.749831) ppi_c","officialName":"E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate","geneAssociation":"","subsystem":"Biomass and maintenance functions"} {"abbreviation":"BIOMASS_Ec_iJO1366_core_53p95M","lowbnd":0,"uppbnd":1000,"obj_coef":1,"equation":"(54.124831) atp_c + (48.601527) h2o_c + (0.017868) pe160_c + (0.054154) pe161_c + (0.001831) nad_c + (0.000447) nadp_c + (0.013013) nh4_c + (0.000576) coa_c + (0.26316) glu__L_c + (0.215096) gtp_c + (0.000223) fad_c + (0.000223) amet_c + (0.26316) gln__L_c + (0.241055) asp__L_c + (0.000223) 10fthf_c + (0.000223) thf_c + (0.513689) ala__L_c + (0.000223) pydx5p_c + (0.045946) pe160_p + (0.09158) cys__L_c + (0.612638) gly_c + (0.221055) pro__L_c + (0.006715) fe2_c + (0.000223) ribflv_c + (0.295792) arg__L_c + (0.241055) asn__L_c + (2.6e-05) 2fe2s_c + (0.00026) 4fe4s_c + (0.000122) bmocogdp_c + (2e-06) btn_c + (0.005205) ca2_c + (0.005205) cl_c + (2.5e-05) cobalt2_c + (0.133508) ctp_c + (0.000709) cu2_c + (0.026166) datp_c + (0.027017) dctp_c + (0.027017) dgtp_c + (0.026166) dttp_c + (0.007808) fe3_c + (0.094738) his__L_c + (0.290529) ile__L_c + (0.195193) k_c + (0.450531) leu__L_c + (0.343161) lys__L_c + (0.153686) met__L_c + (0.008675) mg2_c + (0.000223) mlthf_c + (0.000691) mn2_c + (7e-06) mobd_c + (0.000323) ni2_c + (0.02106) pe161_p + (0.185265) phe__L_c + (0.000223) pheme_c + (0.215792) ser__L_c + (0.000223) sheme_c + (0.004338) so4_c + (0.000223) thmpp_c + (0.253687) thr__L_c + (0.056843) trp__L_c + (0.137896) tyr__L_c + (5.5e-05) udcpdp_c + (0.144104) utp_c + (0.423162) val__L_c + (0.000341) zn2_c + (0.000223) 2ohph_c + (0.019456) kdo2lipid4_e + (0.013894) murein5px4p_p --> (53.95) adp_c + (53.95) h_c + (53.945662) pi_c + (0.773903) ppi_c","officialName":"E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate","geneAssociation":"","subsystem":"Biomass and maintenance functions"} {"abbreviation":"BMOCOS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"moco_c + mptamp_c --> amp_c + cu2_c + bmoco_c","officialName":"Bis-molybdenum cofactor synthase","geneAssociation":"b0827","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BMOGDS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + gtp_c + bmoco_c --> ppi_c + bmoco1gdp_c","officialName":"Bis-molybdopterin guanine dinucleotide synthase (single GDP)","geneAssociation":"b3857 or (b3857 and b3856)","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BMOGDS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + gtp_c + bmoco1gdp_c --> ppi_c + bmocogdp_c","officialName":"Bis-molybdopterin guanine dinucleotide synthase","geneAssociation":"b3857 or (b3857 and b3856)","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BPNT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pap_c --> pi_c + amp_c","officialName":"3',5'-bisphosphate nucleotidase","geneAssociation":"b4214","subsystem":"Cysteine Metabolism"} {"abbreviation":"BSORx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + btnso_c --> h2o_c + nad_c + btn_c","officialName":"Biotin sulfoxide reductase","geneAssociation":"b3551","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BSORy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + btnso_c --> h2o_c + nadp_c + btn_c","officialName":"Biotin sulfoxide reductase","geneAssociation":"b3551","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BTNt2ipp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + btn_p --> h_c + btn_c","officialName":"Biotin transport via proton symport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"BTNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"btn_e <==> btn_p","officialName":"Biotin transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b1377 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"BTS5","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"amet_c + 2fe2s_c + dtbt_c --> h_c + dad_5_c + btn_c + met__L_c + 2fe1s_c","officialName":"Biotin synthase","geneAssociation":"b0775","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BUTCT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + but_c --> ac_c + btcoa_c","officialName":"Acetyl-CoA:butyrate-CoA transferase","geneAssociation":"b2221 and b2222","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"BUTSO3abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + butso3_p --> adp_c + h_c + pi_c + butso3_c","officialName":"Butanesulfonate transport via ABC system (periplasm)","geneAssociation":"(b0936 and b0933 and b0934) or (b0365 and b0366 and b0367)","subsystem":"Transport, Inner Membrane"} {"abbreviation":"BUTSO3tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"butso3_e <==> butso3_p","officialName":"Butanesulfonate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"BUTt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + but_p <==> h_c + but_c","officialName":"Butyrate transport via proton symport, reversible (periplasm)","geneAssociation":"b2223","subsystem":"Transport, Inner Membrane"} {"abbreviation":"BUTtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"but_e <==> but_p","officialName":"Butyrate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"BWCOGDS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + gtp_c + bwco_c --> ppi_c + bwco1gdp_c","officialName":"Tungsten bispterin guanine dinucleotide synthase (single GDP)","geneAssociation":"b3857 or (b3857 and b3856)","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"BWCOGDS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + gtp_c + bwco1gdp_c --> ppi_c + bwcogdp_c","officialName":"Tungsten bispterin 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{"abbreviation":"CADVtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + 15dap_c + lys__L_p --> h_c + lys__L_c + 15dap_p","officialName":"Lysine/Cadaverine antiporter (periplasm)","geneAssociation":"b4132","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CAT","lowbnd":0,"uppbnd":0,"obj_coef":0,"equation":"(2) h2o2_c --> (2) h2o_c + o2_c","officialName":"Catalase","geneAssociation":"b1732 or b3942","subsystem":"Unassigned"} {"abbreviation":"CAt6pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"na1_p + ca2_c <==> na1_c + ca2_p","officialName":"Calcium / sodium antiporter (1:1)","geneAssociation":"b3196","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CBIAT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + cbi_c <==> adocbi_c + pppi_c","officialName":"Cobinamide adenyltransferase","geneAssociation":"b1270","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CBItonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cbi_e --> h_c + cbi_p","officialName":"Cobinamide transport via ton system (extermal)","geneAssociation":"b3966 and (b1252 and b3005 and b3006)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"CBIuabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cbi_p --> adp_c + h_c + pi_c + cbi_c","officialName":"Cobinamide transport via ABC system (uptake, periplasm)","geneAssociation":"b1711 and b1709 and b0158","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CBL1abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cbl1_p --> adp_c + h_c + pi_c + cbl1_c","officialName":"Cob(1)alamin transport via ABC system (periplasm)","geneAssociation":"b1711 and b1709 and b0158","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CBL1tonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cbl1_e --> h_c + cbl1_p","officialName":"Cob(1)alamin transport via 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cbp_c","officialName":"Carbamoyl-phosphate synthase (glutamine-hydrolysing)","geneAssociation":"b0032 and b0033","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"CCGS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + nh4_c + cdg_c --> adp_c + h2o_c + h_c + pi_c + preq0_c","officialName":"7-cyano-7-carbaguanine synthase","geneAssociation":"b0444","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CD2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cd2_c --> adp_c + h_c + pi_c + cd2_p","officialName":"Cadmium (Cd+2) ABC transporter (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CD2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cd2_c --> h_c + cd2_p","officialName":"Cadmium (Cd+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915 or b0752","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CD2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cd2_e <==> cd2_p","officialName":"Cadmium (Cd+2) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CD2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cd2_p --> cd2_c","officialName":"Cadmium (+2) transport in via permease (no H+)","geneAssociation":"b3040","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CDAPPA120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cdpdddecg_c --> (2) h_c + pa120_c + cmp_c","officialName":"CDP-Diacylglycerol pyrophostatase (n-C12:0)","geneAssociation":"b3918","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CDAPPA140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cdpdtdecg_c --> (2) h_c + pa140_c + cmp_c","officialName":"CDP-Diacylglycerol pyrophostatase 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adp_c + h_c + 2p4c2me_c","officialName":"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase","geneAssociation":"b1208","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CFAS160E","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pe161_c + (2) amet_c --> (2) h_c + (2) ahcys_c + cpe160_c","officialName":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)","geneAssociation":"b1661","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CFAS160G","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pg161_c + (2) amet_c --> (2) h_c + (2) ahcys_c + cpg160_c","officialName":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)","geneAssociation":"b1661","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CFAS180E","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pe181_c + (2) amet_c --> (2) h_c + (2) ahcys_c + cpe180_c","officialName":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)","geneAssociation":"b1661","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CFAS180G","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pg181_c + (2) amet_c --> (2) h_c + (2) ahcys_c + cpg180_c","officialName":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)","geneAssociation":"b1661","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CGLYabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cgly_p --> adp_c + h_c + pi_c + cgly_c","officialName":"L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm)","geneAssociation":"b3544 and b3543 and b3542 and b3541 and b3540","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CGLYtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cgly_e <==> cgly_p","officialName":"L-Cysteinylglycine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CHLabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + chol_p --> adp_c + h_c + pi_c + chol_c","officialName":"Choline transport via ABC system (periplasm)","geneAssociation":"b2128 and b2129 and b2130 and b2131","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CHLt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + chol_p --> h_c + chol_c","officialName":"Choline transport via proton symport (periplasm)","geneAssociation":"b0314 or b1801","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CHLtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"chol_e <==> chol_p","officialName":"Choline transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CHOLD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + chol_c --> h_c + nadh_c + betald_c","officialName":"Choline dehydrogenase","geneAssociation":"b0311","subsystem":"Unassigned"} {"abbreviation":"CHORM","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"chor_c --> pphn_c","officialName":"Chorismate mutase","geneAssociation":"b2599 or b2600","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"CHORS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3psme_c --> pi_c + chor_c","officialName":"Chorismate synthase","geneAssociation":"b2329","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"CHRPL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"chor_c --> pyr_c + 4hbz_c","officialName":"Chorismate pyruvate lyase","geneAssociation":"b4039","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CHTBSptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + chtbs_p --> pyr_c + chtbs6p_c","officialName":"Chitobiose transport via PEP:Pyr PTS (periplasm)","geneAssociation":"b2416","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CHTBStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"chtbs_e <==> chtbs_p","officialName":"Chitobiose transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b0929 or b1377 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CINNDO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + o2_c + cinnm_c --> nad_c + cenchddd_c","officialName":"Cinnamate dioxygenase","geneAssociation":"b2538 and b2539 and b2540 and b2542","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"CITL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cit_c --> ac_c + oaa_c","officialName":"Citrate lyase","geneAssociation":"(b0615 and b0616 and b0617) and b0614","subsystem":"Citric Acid Cycle"} {"abbreviation":"CITt3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cit_c --> h_c + cit_p","officialName":"Citrate transport out via proton antiport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CITt7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"succ_c + cit_p --> cit_c + succ_p","officialName":"Citrate transport via succinate antiport (periplasm)","geneAssociation":"b0612","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CITtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cit_e <==> cit_p","officialName":"Citrate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CLIPAabctex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + lipa_cold_p --> adp_c + h_c + pi_c + lipa_cold_e","officialName":"Cold lipid A transport via ABC system (periplasm to extracellular)","geneAssociation":"b3200 and b3201 and b3199 and b4261 and b4262","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"CLPNH120pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn120_p --> h_p + pa120_p + pg120_p","officialName":"Cardiolipin hydrolase (periplasm, n-C12:0)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn140_p --> h_p + pa140_p + pg140_p","officialName":"Cardiolipin hydrolase (periplasm, n-C14:0)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn141_p --> h_p + pa141_p + pg141_p","officialName":"Cardiolipin hydrolase (periplasm, n-C14:1)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn160_p --> h_p + pg160_p + pa160_p","officialName":"Cardiolipin hydrolase (periplasm, n-C16:0)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn161_p --> h_p + pg161_p + pa161_p","officialName":"Cardiolipin hydrolase (periplasm, n-C16:1)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn180_p --> h_p + pa180_p + pg180_p","officialName":"Cardiolipin hydrolase (periplasm, n-C18:0)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNH181pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + clpn181_p --> h_p + pg181_p + pa181_p","officialName":"Cardiolipin hydrolase (periplasm, n-C18:1)","geneAssociation":"","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS120pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg120_p <==> clpn120_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C12:0)","geneAssociation":"b0789 or b1249","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS140pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg140_p <==> clpn140_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C14:0)","geneAssociation":"b1249 or b0789","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS141pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg141_p <==> clpn141_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C14:1)","geneAssociation":"b0789 or b1249","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS160pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg160_p <==> clpn160_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C16:0)","geneAssociation":"b0789 or b1249","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS161pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg161_p <==> clpn161_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C16:1)","geneAssociation":"b1249 or b0789","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS180pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg180_p <==> clpn180_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C18:0)","geneAssociation":"b0789 or b1249","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLPNS181pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"(2) pg181_p <==> clpn181_p + glyc_p","officialName":"Cardiolipin synthase (periplasmic, n-C18:1)","geneAssociation":"b0789 or b1249","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"CLt3_2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + (2) cl_p --> h_p + (2) cl_c","officialName":"Chloride transport out via proton antiport (2:1) (periplasm)","geneAssociation":"b0155 or b1592","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CLtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cl_e <==> cl_p","officialName":"Chloride (Cl-1) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CMPN","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cmp_c --> r5p_c + csn_c","officialName":"CMP nucleosidase","geneAssociation":"","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"CMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cmp_e <==> cmp_p","officialName":"CMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cm_e <==> cm_p","officialName":"Chloramphenicol transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0929 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CMtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cm_p --> h_c + cm_e","officialName":"Chloramphenicol transport via TolC system","geneAssociation":"(b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"CO2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"co2_e <==> co2_p","officialName":"CO2 transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CO2tpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"co2_p <==> co2_c","officialName":"CO2 transporter via diffusion (periplasm)","geneAssociation":"s0001","subsystem":"Transport, Inner Membrane"} {"abbreviation":"COBALT2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cobalt2_c --> adp_c + h_c + pi_c + cobalt2_p","officialName":"Cobalt (Co+2) ABC transporter (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"COBALT2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cobalt2_c --> h_c + cobalt2_p","officialName":"Cobalt (Co+2) transport out via proton antiport (periplasm)","geneAssociation":"b0752 or b3915","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"COBALT2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cobalt2_e <==> cobalt2_p","officialName":"Cobalt (Co+2) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"COBALT2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cobalt2_p --> cobalt2_c","officialName":"Cobalt transport in via permease (no H+)","geneAssociation":"b3040 or b3816","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"COLIPAKpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"colipa_p + udcpdp_p --> colipap_p + udcpp_p","officialName":"Lipid A core kinase (periplasm)","geneAssociation":"b2174","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"COLIPAPabctex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + colipap_p --> adp_c + h_c + pi_c + colipap_e","officialName":"Core oligosaccharide lipid A diphosphate transport via ABC system (periplasm to extracellular)","geneAssociation":"b3200 and b3201 and b3199 and b4261 and b4262","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"COLIPAabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + colipa_c --> adp_c + h_c + pi_c + colipa_p","officialName":"Core oligosaccharide lipid A transport via ABC system (periplasm)","geneAssociation":"b0914","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"COLIPAabctex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + colipa_p --> adp_c + h_c + pi_c + colipa_e","officialName":"Core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)","geneAssociation":"b3200 and b3201 and b3199 and b4261 and b4262","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"CPGNR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) cpgn_c --> (2) h_c + fad_c + (2) fe2_c + (2) cpgn_un_c","officialName":"Coprogen(Fe(III)) reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fmnh2_c + (2) cpgn_c --> (2) h_c + (2) fe2_c + fmn_c + (2) cpgn_un_c","officialName":"Coprogen(Fe(III)) reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNR3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"rbflvrd_c + (2) cpgn_c --> (2) h_c + (2) fe2_c + ribflv_c + (2) cpgn_un_c","officialName":"Coprogen(Fe(III)) reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNUtex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cpgn_un_p --> h_c + cpgn_un_e","officialName":"Coprogen unloaded secretion (extracellular)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNUtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cpgn_un_c --> h_c + cpgn_un_p","officialName":"Coprogen unloaded secretion","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cpgn_p --> adp_c + h_c + pi_c + cpgn_c","officialName":"Coprogen transport via ABC system (periplasm)","geneAssociation":"b0153 and b0151 and b0152","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CPGNexs","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fe3_e + cpgn_un_e --> cpgn_e","officialName":"Coprogen Fe-loading reaction (spontaneaous)","geneAssociation":"s0001","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CPGNtonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cpgn_e --> h_c + cpgn_p","officialName":"Coprogen transport via ton system (extracellular)","geneAssociation":"b1102 and (b1252 and b3005 and b3006)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"CPH4S","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ahdt_c --> h_c + acald_c + pppi_c + cph4_c","officialName":"6-carboxy-5,6,7,8-tetrahydropterin synthase","geneAssociation":"b2765","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CPMPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + gtp_c --> ppi_c + cpmp_c","officialName":"Cyclic pyranopterin monophosphate synthase","geneAssociation":"b0781 and b0783","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CPPPGO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + o2_c + cpppg3_c --> (2) h2o_c + (2) co2_c + pppg9_c","officialName":"Coproporphyrinogen oxidase (O2 required)","geneAssociation":"b2436","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CPPPGO2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) amet_c + cpppg3_c --> (2) co2_c + (2) dad_5_c + (2) met__L_c + pppg9_c","officialName":"Oxygen Independent coproporphyrinogen-III oxidase","geneAssociation":"b3867","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"CRNBTCT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"bbtcoa_c + crn_c <==> crncoa_c + gbbtn_c","officialName":"Gamma-butyrobetainyl-CoA: carnitine CoA transferase","geneAssociation":"b0038","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CRNCAL2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + coa_c + 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Ligase","geneAssociation":"b0037","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CRNDabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + crn__D_p --> adp_c + h_c + pi_c + crn__D_c","officialName":"D-carnitine transport via ABC system (periplasm)","geneAssociation":"b2677 and b2678 and b2679","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNDt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + crn__D_p <==> h_c + crn__D_c","officialName":"D-carnitine outward transport (H+ antiport)","geneAssociation":"b4111","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"crn__D_e <==> crn__D_p","officialName":"D-carnitine transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0929 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CRNabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + crn_p --> adp_c + h_c + pi_c + crn_c","officialName":"L-carnitine transport via ABC system (periplasm)","geneAssociation":"b2677 and b2678 and b2679","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + crn_p <==> h_c + crn_c","officialName":"L-carnitine outward transport (H+ antiport)","geneAssociation":"b4111","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNt7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"gbbtn_c + crn_p --> crn_c + gbbtn_p","officialName":"Carnitine/butyrobetaine antiporter (periplasm)","geneAssociation":"b0040","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNt8pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"crn__D_c + crn_p --> crn_c + crn__D_p","officialName":"L-carnitine/D-carnitine antiporter (periplasm)","geneAssociation":"b0040","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CRNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"crn_e <==> crn_p","officialName":"L-carnitine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + accoa_c + oaa_c --> h_c + coa_c + cit_c","officialName":"Citrate synthase","geneAssociation":"b0720","subsystem":"Citric Acid Cycle"} {"abbreviation":"CSND","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + csn_c --> nh4_c + ura_c","officialName":"Cytosine deaminase","geneAssociation":"b0337","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"CSNt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + csn_p --> h_c + csn_c","officialName":"Cytosine transport in via proton symport (periplasm)","geneAssociation":"b0336","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CSNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"csn_e <==> csn_p","officialName":"Cytosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CTBTCAL2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + coa_c + ctbt_c --> adp_c + pi_c + ctbtcoa_c","officialName":"Crotonobetaine-CoA Ligase","geneAssociation":"b0037","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CTBTabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + ctbt_p --> adp_c + h_c + pi_c + ctbt_c","officialName":"Crotonobetaine transport via ABC system (periplasm)","geneAssociation":"b2677 and b2678 and b2679","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CTBTt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ctbt_p <==> h_c + ctbt_c","officialName":"Cronobetaine outward transport (H+ antiport)","geneAssociation":"b4111","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CTECOAI6","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tdecoa_c <==> td2coa_c","officialName":"3-cis-2-trans-enoyl-CoA isomerase","geneAssociation":"b3846","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"CTECOAI7","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"hdcoa_c <==> hdd2coa_c","officialName":"3-cis-2-trans-enoyl-CoA isomerase","geneAssociation":"b3846","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"CTECOAI8","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"odecoa_c <==> od2coa_c","officialName":"3-cis-2-trans-enoyl-CoA isomerase","geneAssociation":"b3846","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"CTPS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + gln__L_c + utp_c --> adp_c + (2) h_c + pi_c + glu__L_c + ctp_c","officialName":"CTP synthase (glutamine)","geneAssociation":"b2780","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"CU1Opp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_p + o2_p + (4) cu_p --> (2) h2o_p + (4) cu2_p","officialName":"Cuprous Oxidase (Cu+1)","geneAssociation":"b0123","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CU1abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cu_c --> adp_c + h_c + pi_c + cu_p","officialName":"Copper (Cu +1) ABC transporter (periplasm)","geneAssociation":"b0484","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CU2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cu2_c --> adp_c + h_c + pi_c + cu2_p","officialName":"Copper (Cu+2) ABC transporter (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CU2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cu2_e <==> cu2_p","officialName":"Copper (Cu+2) transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b0241 or b0929 or b1377","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CU2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cu2_p --> cu2_c","officialName":"Copper transport in via permease (no H+)","geneAssociation":"b3040","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CUt3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_e + cu_c --> h_c + cu_e","officialName":"Copper transport out via proton antiport","geneAssociation":"b0572 and b0573 and b0574 and b0575","subsystem":"Transport, Outer Membrane"} {"abbreviation":"CUtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cu_e <==> cu_p","officialName":"Copper (Cu+1) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYANST","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cyan_c + tsul_c --> h_c + so3_c + tcynt_c","officialName":"Cyanide sulfurtransferase","geneAssociation":"b3425","subsystem":"Unassigned"} {"abbreviation":"CYANSTpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cyan_p + tsul_p --> h_p + so3_p + tcynt_p","officialName":"Cyanide sulfurtransferase (periplasmic)","geneAssociation":"b1308","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"CYANtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cyan_e <==> cyan_p","officialName":"Cyanide transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYNTAH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(3) h_c + hco3_c + cynt_c --> nh4_c + (2) co2_c","officialName":"Cyanate aminohydrolase","geneAssociation":"b0340","subsystem":"Nitrogen Metabolism"} {"abbreviation":"CYNTt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cynt_p --> h_c + cynt_c","officialName":"Cyanate transport via proton symport (periplasm)","geneAssociation":"b0341","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYNTtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cynt_e <==> cynt_p","officialName":"Cyanate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYSDDS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cys__D_c --> nh4_c + pyr_c + h2s_c","officialName":"D-cysteine desulfhydrase","geneAssociation":"b1919","subsystem":"Cysteine Metabolism"} {"abbreviation":"CYSDS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cys__L_c --> nh4_c + pyr_c + h2s_c","officialName":"Cysteine Desulfhydrase","geneAssociation":"b3708 or b3008","subsystem":"Cysteine Metabolism"} {"abbreviation":"CYSDabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cys__D_p --> adp_c + h_c + pi_c + cys__D_c","officialName":"D-cysteine uptake via ABC system (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYSDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cys__D_e <==> cys__D_p","officialName":"D-cysteine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYSS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"acser_c + h2s_c --> h_c + ac_c + cys__L_c","officialName":"Cysteine synthase","geneAssociation":"b2414 or b2421","subsystem":"Cysteine Metabolism"} {"abbreviation":"CYSSADS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + 3sala_c --> ala__L_c + so2_c","officialName":"L-cysteine sulfinic acid desulfurase","geneAssociation":"b2810","subsystem":"Cysteine Metabolism"} {"abbreviation":"CYSTL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cyst__L_c --> nh4_c + pyr_c + hcys__L_c","officialName":"Cystathionine b-lyase","geneAssociation":"b1622 or b3008","subsystem":"Methionine Metabolism"} {"abbreviation":"CYSTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + cys__L_c + trnacys_c --> amp_c + ppi_c + cystrna_c","officialName":"Cysteinyl-tRNA synthetase","geneAssociation":"b0526","subsystem":"tRNA Charging"} {"abbreviation":"CYSabc2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cys__L_c --> adp_c + h_c + pi_c + cys__L_p","officialName":"L-cysteine export via ABC system (cytoplasm to periplasm)","geneAssociation":"b0886 and b0887","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYSabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + cys__L_p --> adp_c + h_c + pi_c + cys__L_c","officialName":"L-cysteine uptake via ABC system (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cys__L_e <==> cys__L_p","officialName":"L-cysteine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYStpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cys__L_c --> cys__L_p","officialName":"L-cysteine export via facilitated transport","geneAssociation":"b2578 or b1533","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYTBD2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + (0.5) o2_c + mql8_c --> h2o_c + (2) h_p + mqn8_c","officialName":"Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)","geneAssociation":"b0978 and b0979","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CYTBDpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + (0.5) o2_c + q8h2_c --> h2o_c + (2) h_p + q8_c","officialName":"Cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm)","geneAssociation":"(b0978 and b0979) or (b0733 and b0734)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CYTBO3_4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + (0.5) o2_c + q8h2_c --> h2o_c + (4) h_p + q8_c","officialName":"Cytochrome oxidase bo3 (ubiquinol-8: 4 protons) (periplasm)","geneAssociation":"b0429 and b0430 and b0431 and b0432","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"CYTD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + cytd_c --> nh4_c + uri_c","officialName":"Cytidine deaminase","geneAssociation":"b2143","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"CYTDH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cytd_c --> rib__D_c + csn_c","officialName":"Cytidine hydrolase","geneAssociation":"b2162 or b0651 or b0030","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"CYTDK2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"gtp_c + cytd_c --> h_c + gdp_c + cmp_c","officialName":"Cytidine kinase (GTP)","geneAssociation":"b2066","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"CYTDt2pp_copy1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cytd_p --> h_c + cytd_c","officialName":"Cytidine transport in via proton symport (periplasm)","geneAssociation":"b2393 or b2964","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYTDt2pp_copy2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + cytd_p <==> h_c + cytd_c","officialName":"Cytidine transport in via proton symport (periplasm)","geneAssociation":"b2406","subsystem":"Transport, Inner Membrane"} {"abbreviation":"CYTDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"cytd_e <==> cytd_p","officialName":"Cytidine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"CYTK1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + cmp_c <==> adp_c + cdp_c","officialName":"Cytidylate kinase (CMP)","geneAssociation":"b0910","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"CYTK2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + dcmp_c <==> adp_c + dcdp_c","officialName":"Cytidylate kinase (dCMP)","geneAssociation":"b0910","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DAAD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ala__D_c + fad_c --> nh4_c + pyr_c + fadh2_c","officialName":"D-Amino acid dehydrogenase","geneAssociation":"b1189","subsystem":"Alanine and Aspartate Metabolism"} {"abbreviation":"DADA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + dad_2_c --> nh4_c + din_c","officialName":"Deoxyadenosine deaminase","geneAssociation":"b1623","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DADK","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + damp_c <==> adp_c + dadp_c","officialName":"Deoxyadenylate kinase","geneAssociation":"b0474","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DADNt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + dad_2_p --> h_c + dad_2_c","officialName":"Deoxyadenosine transport in via proton symport (periplasm)","geneAssociation":"b2964 or b2393","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DADNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dad_2_e <==> dad_2_p","officialName":"Deoxyadenosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0411","subsystem":"Transport, Outer Membrane"} {"abbreviation":"DAGK120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr120_c + atp_c --> adp_c + h_c + pa120_c","officialName":"Diacylglycerol kinase (n-C12:0)","geneAssociation":"b4042","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"DAGK140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr140_c + atp_c --> adp_c + h_c + pa140_c","officialName":"Diacylglycerol kinase (n-C14:0)","geneAssociation":"b4042","subsystem":"Glycerophospholipid 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{"abbreviation":"DAGK181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"12dgr181_c + atp_c --> adp_c + h_c + pa181_c","officialName":"Diacylglycerol kinase (n-C18:1)","geneAssociation":"b4042","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"DALAt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ala__D_p --> h_c + ala__D_c","officialName":"D-alanine transport in via proton symport (periplasm)","geneAssociation":"b4208","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DALAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ala__D_e <==> ala__D_p","officialName":"D-Alanine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DAMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"damp_e <==> damp_p","officialName":"DAMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DAPAL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 23dappa_c --> (2) nh4_c + pyr_c","officialName":"2,3-diaminopropionate amonnia lyase","geneAssociation":"b2871","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DAPDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 26dap__M_c --> co2_c + lys__L_c","officialName":"Diaminopimelate decarboxylase","geneAssociation":"b2838","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"DAPE","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"26dap_LL_c <==> 26dap__M_c","officialName":"Diaminopimelate epimerase","geneAssociation":"b3809","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"DAPabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + 26dap__M_p --> adp_c + h_c + pi_c + 26dap__M_c","officialName":"M-diaminopimelic acid ABC transport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DAPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"15dap_e <==> 15dap_p","officialName":"1,5-Diaminopentane transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DASYN120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pa120_c + ctp_c --> ppi_c + cdpdddecg_c","officialName":"CDP-diacylglycerol synthetase (n-C12:0)","geneAssociation":"b0175","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"DASYN140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pa140_c + ctp_c --> ppi_c + cdpdtdecg_c","officialName":"CDP-diacylglycerol synthetase (n-C14:0)","geneAssociation":"b0175","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"DASYN141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pa141_c + ctp_c --> ppi_c + cdpdtdec7eg_c","officialName":"CDP-diacylglycerol synthetase 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{"abbreviation":"DDGALK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2dh3dgal_c --> adp_c + h_c + 2dh3dgal6p_c","officialName":"2-dehydro-3-deoxygalactonokinase","geneAssociation":"b3693","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DDGLCNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + 2ddglcn_p <==> h_c + 2ddglcn_c","officialName":"2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)","geneAssociation":"b3909","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DDGLCNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"2ddglcn_e <==> 2ddglcn_p","officialName":"2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DDGLK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 2ddglcn_c --> adp_c + h_c + 2ddg6p_c","officialName":"2-dehydro-3-deoxygluconokinase","geneAssociation":"b3526","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DDPA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pep_c + e4p_c --> pi_c + 2dda7p_c","officialName":"3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase","geneAssociation":"b2601 or b0754 or b1704","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"DDPGALA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"2dh3dgal6p_c <==> pyr_c + g3p_c","officialName":"2-dehydro-3-deoxy-6-phosphogalactonate aldolase","geneAssociation":"b4477","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DGK1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + dgmp_c <==> adp_c + dgdp_c","officialName":"Deoxyguanylate kinase (dGMP:ATP)","geneAssociation":"b3648","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DGMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dgmp_e <==> dgmp_p","officialName":"DGMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DGSNt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + dgsn_p --> h_c + dgsn_c","officialName":"Deoxyguanosine transport in via proton symport (periplasm)","geneAssociation":"b2964","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DGSNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dgsn_e <==> dgsn_p","officialName":"Deoxyguanosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DHACOAH","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 23dhacoa_c <==> 3hadpcoa_c","officialName":"2,3-dehydroadipyl-CoA hydratase","geneAssociation":"b1393","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DHAD1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23dhmb_c --> h2o_c + 3mob_c","officialName":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)","geneAssociation":"b3771","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"DHAD2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"23dhmp_c --> h2o_c + 3mop_c","officialName":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)","geneAssociation":"b3771","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"DHAPT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + dha_c --> pyr_c + dhap_c","officialName":"Dihydroxyacetone phosphotransferase","geneAssociation":"b1200 and b1199 and b1198 and b2415 and b2416","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DHAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dha_e <==> dha_p","officialName":"Dihydroxyacetone transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DHAtpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dha_p <==> dha_c","officialName":"Dihydroxyacetone transport via facilitated diffusion (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DHBD","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + 23ddhb_c <==> h_c + nadh_c + 23dhb_c","officialName":"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase","geneAssociation":"b0596","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DHBS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + 23dhb_c --> ppi_c + 23dhba_c","officialName":"2,3-dihydroxybenzoate adenylate synthase","geneAssociation":"b0594","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DHBSH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 23dhbzs_c --> ser__L_c + 23dhb_c","officialName":"2,3-dihydroxybenzoylserine hydrolase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DHCIND","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + cenchddd_c --> h_c + nadh_c + dhcinnm_c","officialName":"2,3-dihydroxycinnamate dehydrogenase","geneAssociation":"b2541","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DHCINDO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dhcinnm_c + o2_c --> h_c + hkntd_c","officialName":"2,3-dihydroxycinnamate 1,2-dioxygenase","geneAssociation":"b0348","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DHDPRy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 23dhdp_c --> nadp_c + thdp_c","officialName":"Dihydrodipicolinate reductase (NADPH)","geneAssociation":"b0031","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"DHDPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pyr_c + aspsa_c --> (2) h2o_c + h_c + 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{"abbreviation":"DHNPTE","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dhnpt_c <==> dhmpt_c","officialName":"Dihydroneopterin epimerase","geneAssociation":"b3058","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DHORD2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"q8_c + dhor__S_c --> q8h2_c + orot_c","officialName":"Dihydoorotic acid dehydrogenase (quinone8)","geneAssociation":"b0945","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"DHORD5","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mqn8_c + dhor__S_c --> mql8_c + orot_c","officialName":"Dihydroorotic acid (menaquinone-8)","geneAssociation":"b0945","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"DHORDfum","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fum_c + dhor__S_c --> succ_c + orot_c","officialName":"Fumarate dependent DHORD","geneAssociation":"","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"DHORTS","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dhor__S_c <==> h_c + cbasp_c","officialName":"Dihydroorotase","geneAssociation":"b1062","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"DHPPD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + cechddd_c --> h_c + nadh_c + dhpppn_c","officialName":"2,3-dihydroxyphenylpropionate dehydrogenase","geneAssociation":"b2541","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DHPPDA2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + h_c + 25drapp_c --> nh4_c + 5apru_c","officialName":"Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)","geneAssociation":"b0414","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DHPS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4abz_c + 6hmhptpp_c --> ppi_c + dhpt_c","officialName":"Dihydropteroate synthase","geneAssociation":"b3177","subsystem":"Cofactor and Prosthetic Group 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{"abbreviation":"DHQS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2dda7p_c --> pi_c + 3dhq_c","officialName":"3-dehydroquinate synthase","geneAssociation":"b3389","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"DHQTi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"3dhq_c --> h2o_c + 3dhsk_c","officialName":"3-dehydroquinate dehydratase, irreversible","geneAssociation":"b1693","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"DIMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dimp_e <==> dimp_p","officialName":"DIMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DINSt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + din_p --> h_c + din_c","officialName":"Deoxyinosine transport in via proton symport (periplasm)","geneAssociation":"b2964","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DINStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"din_e <==> din_p","officialName":"Deoxyinosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DKGLCNR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 25dkglcn_c --> 2dhguln_c + nadp_c","officialName":"2,5-diketo-D-gluconate reductase","geneAssociation":"b0207 or b3012","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DKGLCNR2x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + 25dkglcn_c --> nad_c + 5dglcn_c","officialName":"2,5-diketo-D-gluconate reductase (NADH)","geneAssociation":"b3553","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DKGLCNR2y","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 25dkglcn_c --> nadp_c + 5dglcn_c","officialName":"2,5-diketo-D-gluconate reductase 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b1873","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"DMSOtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dmso_e <==> dmso_p","officialName":"Dimethyl sulfoxide transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DMSOtpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dmso_p <==> dmso_c","officialName":"Dimethyl sulfoxide transport via diffusion (periplasm)","geneAssociation":"s0001","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DMStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dms_e <==> dms_p","officialName":"Dimethyl sulfide transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DM_4crsol_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4crsol_c --> ","officialName":"Sink needed to allow p-Cresol to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DM_5drib_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"5drib_c --> ","officialName":"Sink needed to allow 5'-deoxyribose to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DM_aacald_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"aacald_c --> ","officialName":"Sink needed to allow aminoacetaldehyde to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DM_amob_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"amob_c --> ","officialName":"Sink needed to allow S-Adenosyl-4-methylthio-2-oxobutanoate to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DM_mththf_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mththf_c --> ","officialName":"Sink needed to allow (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DM_oxam_c","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"oxam_c --> ","officialName":"Sink needed to allow oxamate to leave system","geneAssociation":"","subsystem":"Intracellular demand"} {"abbreviation":"DNMPPA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dhpmp_c --> pi_c + dhnpt_c","officialName":"Dihydroneopterin monophosphate dephosphorylase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DNTPPA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ahdt_c --> h_c + ppi_c + dhpmp_c","officialName":"Dihydroneopterin triphosphate pyrophosphatase","geneAssociation":"b0099 or b1865","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DOGULNR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + 23doguln_c --> nad_c + 3dhguln_c","officialName":"2,3 dioxo-L-gulonate 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{"abbreviation":"DPCOAK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + dpcoa_c --> adp_c + h_c + coa_c","officialName":"Dephospho-CoA kinase","geneAssociation":"b0103","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DPR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 2dhp_c --> nadp_c + pant__R_c","officialName":"2-dehydropantoate 2-reductase","geneAssociation":"b0425 or b3774","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DRPA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2dr5p_c --> acald_c + g3p_c","officialName":"Deoxyribose-phosphate aldolase","geneAssociation":"b4381","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DSBAO1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"q8_c + dsbard_p --> q8h2_c + dsbaox_p","officialName":"DsbA protein reoxidation reaction (aerobic)","geneAssociation":"b3860 and b1185","subsystem":"Unassigned"} {"abbreviation":"DSBAO2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mqn8_c + dsbard_p --> mql8_c + dsbaox_p","officialName":"DsbA protein reoxidation reaction (anaerobic)","geneAssociation":"b3860 and b1185","subsystem":"Unassigned"} {"abbreviation":"DSBCGT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dsbcox_p + (2) gthrd_p --> dsbcrd_p + gthox_p","officialName":"DsbC:glutathione thiotransferase","geneAssociation":"b2893","subsystem":"Unassigned"} {"abbreviation":"DSBDR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dsbdox_c + trdrd_c --> dsbdrd_c + trdox_c","officialName":"DsbD reductase","geneAssociation":"(b4136 and b2582) or (b4136 and b3781)","subsystem":"Unassigned"} {"abbreviation":"DSBGGT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) gthrd_p + dsbgox_p --> gthox_p + dsbgrd_p","officialName":"DsbG:glutathione thiotransferase","geneAssociation":"b0604","subsystem":"Unassigned"} {"abbreviation":"DSERDHr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nadp_c + ser__D_c <==> h_c + nadph_c + 2amsa_c","officialName":"D-serine dehydrogenase","geneAssociation":"b1539","subsystem":"Glycine and Serine Metabolism"} {"abbreviation":"DSERt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ser__D_p --> h_c + ser__D_c","officialName":"D-serine transport in via proton symport (periplasm)","geneAssociation":"b4208","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DSERtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ser__D_e <==> ser__D_p","officialName":"D-serine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DTARTD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"tartr__D_c --> h2o_c + oaa_c","officialName":"D(-)-tartrate dehydratase","geneAssociation":"b4122","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"DTMPK","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + dtmp_c <==> adp_c + dtdp_c","officialName":"DTMP kinase","geneAssociation":"b1098","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DTMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dtmp_e <==> dtmp_p","officialName":"DTMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DUMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"dump_e <==> dump_p","officialName":"DUMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"DURADx","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + 56dura_c <==> h_c + nadh_c + ura_c","officialName":"Dihydrouracil dehydrogenase (NAD)","geneAssociation":"b2147 and b2146","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DURIK1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + duri_c --> adp_c + h_c + dump_c","officialName":"Deoxyuridine kinase (ATP:Deoxyuridine)","geneAssociation":"b1238","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DURIPP","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + duri_c <==> ura_c + 2dr1p_c","officialName":"Deoxyuridine phosphorylase","geneAssociation":"b4382 or b4384","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DURIt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + duri_p --> h_c + duri_c","officialName":"Deoxyuridine transport in via proton symport (periplasm)","geneAssociation":"b2964 or b2393","subsystem":"Transport, Inner Membrane"} {"abbreviation":"DURItex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"duri_e <==> duri_p","officialName":"Deoxyuridine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0411","subsystem":"Transport, Outer Membrane"} {"abbreviation":"DUTPDP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dutp_c --> h_c + ppi_c + dump_c","officialName":"DUTP diphosphatase","geneAssociation":"b3640 or b2251","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"DXPRIi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + dxyl5p_c --> nadp_c + 2me4p_c","officialName":"1-deoxy-D-xylulose reductoisomerase","geneAssociation":"b0173","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DXPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + pyr_c + g3p_c --> co2_c + dxyl5p_c","officialName":"1-deoxy-D-xylulose 5-phosphate synthase","geneAssociation":"b0420","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"DXYLK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + dxyl_c --> adp_c + h_c + dxyl5p_c","officialName":"1-Deoxy-D-xylulose kinase","geneAssociation":"b3564","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"D_LACt2pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + lac__D_p <==> h_c + lac__D_c","officialName":"D-lactate transport via proton symport (periplasm)","geneAssociation":"b3603 or b2975","subsystem":"Transport, Inner Membrane"} {"abbreviation":"D_LACtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"lac__D_e <==> lac__D_p","officialName":"D-lactate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"E4PD","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + e4p_c <==> (2) h_c + nadh_c + 4per_c","officialName":"Erythrose 4-phosphate dehydrogenase","geneAssociation":"b2927 or b1779","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"EAR100x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + tdec2eACP_c --> nad_c + dcaACP_c","officialName":"Enoyl-[acyl-carrier-protein] 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t3c5ddeceACP_c --> nad_c + cddec5eACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR121y","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + t3c5ddeceACP_c --> nadp_c + cddec5eACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:1)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR140x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + tmrs2eACP_c --> nad_c + myrsACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR140y","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + tmrs2eACP_c --> nadp_c + myrsACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:0)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR141x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + t3c7mrseACP_c --> nad_c + tdeACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR141y","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + t3c7mrseACP_c --> nadp_c + tdeACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:1)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR160x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + tpalm2eACP_c --> nad_c + palmACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0)","geneAssociation":"b1288","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"EAR160y","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + tpalm2eACP_c --> nadp_c + palmACP_c","officialName":"Enoyl-[acyl-carrier-protein] reductase (NADPH) 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(ethanesulfonate)","geneAssociation":"b0935","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FDMO4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + fmnh2_c + butso3_c --> h2o_c + h_c + btal_c + fmn_c + so3_c","officialName":"FMNH2-dependent monooxygenase (butanesulfonate)","geneAssociation":"b0935","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FDMO6","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + fmnh2_c + sulfac_c --> h2o_c + h_c + fmn_c + so3_c + glx_c","officialName":"FMNH2-dependent monooxygenase (sulfoacetate)","geneAssociation":"b0935","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + fe2_p --> adp_c + h_c + pi_c + fe2_c","officialName":"Iron (II) transport via ABC system (periplasm)","geneAssociation":"b3409","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE2t2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fe2_p --> h_c + fe2_c","officialName":"Iron (II) transport in via proton symport (periplasm)","geneAssociation":"b2392","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fe2_c --> h_c + fe2_p","officialName":"Iron (Fe+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"fe2_e <==> fe2_p","officialName":"Iron (II) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"FE2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fe2_p --> fe2_c","officialName":"Iron (+2) transport in via permease (no H+)","geneAssociation":"b3040","subsystem":"Inorganic Ion 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{"abbreviation":"FE3DHBZSabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + fe3dhbzs_p --> adp_c + h_c + pi_c + fe3dhbzs_c","officialName":"Ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)","geneAssociation":"b0592 and b0588 and b0590 and b0589","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3DHBZStonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fe3dhbzs_e --> h_c + fe3dhbzs_p","officialName":"Ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular)","geneAssociation":"(b0805 and (b1252 and b3005 and b3006)) or (b2155 and (b1252 and b3005 and b3006))","subsystem":"Transport, Outer Membrane"} {"abbreviation":"FE3HOXR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) fe3hox_c --> (2) h_c + fad_c + (2) fe2_c + (2) fe3hox_un_c","officialName":"Fe(III)hydroxamate reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3HOXR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fmnh2_c + (2) fe3hox_c --> (2) h_c + (2) fe2_c + fmn_c + (2) fe3hox_un_c","officialName":"Fe(III)hydroxamate reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3HOXR3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"rbflvrd_c + (2) fe3hox_c --> (2) h_c + (2) fe2_c + ribflv_c + (2) fe3hox_un_c","officialName":"Fe(III)hydroxamate reductase","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3HOXUtex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fe3hox_un_c --> h_c + fe3hox_un_p","officialName":"Fe(III)hydroxamate unloaded secretion","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3HOXUtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fe3hox_un_p --> h_c + fe3hox_un_e","officialName":"Fe(III)hydroxamate unloaded secretion 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{"abbreviation":"FE3Ri","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) fe3_c --> (2) h_c + fad_c + (2) fe2_c","officialName":"Fe(III) reduction","geneAssociation":"b3844","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"FE3abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + fe3_p --> adp_c + h_c + pi_c + fe3_c","officialName":"Iron (III) transport via ABC system (periplasm to cytoplasm)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FE3tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"fe3_e <==> fe3_p","officialName":"Iron (III) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"FECRMR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) fecrm_c --> (2) h_c + fad_c + (2) fe2_c + (2) fecrm_un_c","officialName":"Ferrichrome 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fecrm_un_p","officialName":"Ferrichrome (minus Fe) secretion (to periplasm)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FECRMabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + fecrm_p --> adp_c + h_c + pi_c + fecrm_c","officialName":"Ferrichrome transport via ABC system (periplasm)","geneAssociation":"b0153 and b0151 and b0152","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FECRMexs","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fe3_e + fecrm_un_e --> fecrm_e","officialName":"Ferrichrome Fe(III)-loading reaction (spontaneous)","geneAssociation":"s0001","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FECRMtonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fecrm_e --> h_c + fecrm_p","officialName":"Ferrichrome transport via ton system (extracellular)","geneAssociation":"b0150 and (b1252 and b3005 and b3006)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"FEENTERR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) feenter_c --> (2) h_c + fad_c + (2) fe2_c + (2) enter_c","officialName":"Fe-enterobactin reduction (Fe(III)-unloading)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEENTERR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fmnh2_c + (2) feenter_c --> (2) h_c + (2) fe2_c + fmn_c + (2) enter_c","officialName":"Fe-enterobactin reduction (Fe(III)-unloading)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEENTERR3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"rbflvrd_c + (2) feenter_c --> (2) h_c + (2) fe2_c + ribflv_c + (2) enter_c","officialName":"Fe-enterobactin reduction (Fe(III)-unloading)","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEENTERabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + feenter_p --> adp_c + h_c + pi_c + 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{"abbreviation":"FEENTERtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + enter_c --> h_c + enter_p","officialName":"Enterochelin transport (secretion)","geneAssociation":"b0591","subsystem":"Transport, Inner Membrane"} {"abbreviation":"FEOXAMR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) feoxam_c --> (2) h_c + fad_c + (2) fe2_c + (2) feoxam_un_c","officialName":"Ferroxamine reductase","geneAssociation":"b4367","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEOXAMR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fmnh2_c + (2) feoxam_c --> (2) h_c + (2) fe2_c + fmn_c + (2) feoxam_un_c","officialName":"Ferroxamine reductase","geneAssociation":"b4367","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEOXAMR3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"rbflvrd_c + (2) feoxam_c --> (2) h_c + (2) fe2_c + ribflv_c + (2) feoxam_un_c","officialName":"Ferroxamine 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{"abbreviation":"FEOXAMexs","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fe3_e + feoxam_un_e --> feoxam_e","officialName":"Ferroxamine Fe3-loading reaction (spontaneous)","geneAssociation":"s0001","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FEOXAMtonex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + feoxam_e --> h_c + feoxam_p","officialName":"Ferroxamine transport via ton system (extracellular)","geneAssociation":"b0150 and (b1252 and b3005 and b3006)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"FEROpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_p + o2_p + (4) fe2_p --> (2) h2o_p + (4) fe3_p","officialName":"Ferroxidase","geneAssociation":"b0123","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"FESD1s","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + h2o2_c + (2) 4fe4s_c --> (2) h2o_c + (2) fe3_c + (2) 3fe4s_c","officialName":"Iron-sulfur cluster damage (peroxide, 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{"abbreviation":"FOMETRi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 5fthf_c --> h2o_c + methf_c","officialName":"Aminomethyltransferase","geneAssociation":"b2912","subsystem":"Folate Metabolism"} {"abbreviation":"FORCT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"forcoa_c + oxa_c <==> for_c + oxalcoa_c","officialName":"Formyl-CoA Transferase","geneAssociation":"b2374","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"FORt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + for_p --> h_c + for_c","officialName":"Formate transport via proton symport (uptake only, periplasm)","geneAssociation":"b0904 or b2492","subsystem":"Transport, Inner Membrane"} {"abbreviation":"FORtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"for_e <==> for_p","officialName":"Formate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"FORtppi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"for_c --> for_p","officialName":"Formate transport via diffusion (cytoplasm to periplasm)","geneAssociation":"b0904 or b2492","subsystem":"Transport, Inner Membrane"} {"abbreviation":"FRD2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fum_c + mql8_c --> mqn8_c + succ_c","officialName":"Fumarate reductase","geneAssociation":"b4151 and b4152 and b4153 and b4154","subsystem":"Citric Acid Cycle"} {"abbreviation":"FRD3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fum_c + 2dmmql8_c --> succ_c + 2dmmq8_c","officialName":"Fumarate reductase","geneAssociation":"b4151 and b4152 and b4153 and b4154","subsystem":"Citric Acid Cycle"} {"abbreviation":"FRUK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + f1p_c --> adp_c + h_c + fdp_c","officialName":"Fructose-1-phosphate kinase","geneAssociation":"b2168","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"FRULYSDG","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + frulysp_c <==> g6p_c + lys__L_c","officialName":"Fructoselysine phosphate deglycase","geneAssociation":"b3371","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"FRULYSE","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"psclys_c <==> frulys_c","officialName":"Fructoselysine 3-epimerase","geneAssociation":"b4474","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"FRULYSK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + frulys_c --> adp_c + h_c + frulysp_c","officialName":"Fructoselysine Kinase","geneAssociation":"b3374","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"FRULYSt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + frulys_p --> h_c + frulys_c","officialName":"Fructoselysine transport via proton symport (periplasm)","geneAssociation":"b3370","subsystem":"Transport, Inner Membrane"} {"abbreviation":"FRULYStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"frulys_e <==> frulys_p","officialName":"Fructoselysine transporter via diffusion (extracellular)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"FRUURt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fruur_p <==> h_c + fruur_c","officialName":"D-fructuronate transport via proton symport, reversible (periplasm)","geneAssociation":"b4321","subsystem":"Transport, Inner Membrane"} {"abbreviation":"FRUURtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"fruur_e <==> fruur_p","officialName":"D-fructuronate transport via diffusion (extracellular)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"FRUpts2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + fru_p --> pyr_c + f6p_c","officialName":"Fructose transport via PEP:Pyr PTS (f6p 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{"abbreviation":"FUSAtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + fusa_p --> h_c + fusa_e","officialName":"Fusidic acid transport via TolC system","geneAssociation":"(b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"G1PACT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + gam1p_c --> h_c + coa_c + acgam1p_c","officialName":"Glucosamine-1-phosphate N-acetyltransferase","geneAssociation":"b3730","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"G1PPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + g1p_p --> pi_p + glc__D_p","officialName":"Glucose-1-phosphatase","geneAssociation":"b1002","subsystem":"Glycolysis/Gluconeogenesis"} {"abbreviation":"G1PTT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + dttp_c + g1p_c --> ppi_c + dtdpglu_c","officialName":"Glucose-1-phosphate thymidylyltransferase","geneAssociation":"b2039 or b3789","subsystem":"Cell Envelope 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{"abbreviation":"G3PAT120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ddcaACP_c + glyc3p_c --> ACP_c + 1ddecg3p_c","officialName":"Glycerol-3-phosphate acyltransferase (C12:0)","geneAssociation":"b1094 and b4041","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"G3PAT140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"myrsACP_c + glyc3p_c --> ACP_c + 1tdecg3p_c","officialName":"Glycerol-3-phosphate acyltransferase (C14:0)","geneAssociation":"b1094 and b4041","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"G3PAT141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"tdeACP_c + glyc3p_c --> ACP_c + 1tdec7eg3p_c","officialName":"Glycerol-3-phosphate acyltransferase (C14:1)","geneAssociation":"b1094 and b4041","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"G3PAT160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"palmACP_c + glyc3p_c --> ACP_c + 1hdecg3p_c","officialName":"Glycerol-3-phosphate acyltransferase 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{"abbreviation":"G3PEtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"g3pe_e <==> g3pe_p","officialName":"Glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"G3PGabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + g3pg_p --> adp_c + h_c + pi_c + g3pg_c","officialName":"Sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm)","geneAssociation":"b3452 and b3453 and b3450 and b3451","subsystem":"Transport, Inner Membrane"} {"abbreviation":"G3PGtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"g3pg_e <==> g3pg_p","officialName":"Glycerophoglycerol transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"G3PIabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + 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{"abbreviation":"GALCTD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"galct__D_c --> h2o_c + 5dh4dglc_c","officialName":"Galactarate dehydratase","geneAssociation":"b3128","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"GALCTLO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + galctn__L_c --> h_c + nadh_c + tagur_c","officialName":"L-galactonate oxidoreductase","geneAssociation":"b4358","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"GALCTND","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"galctn__D_c --> h2o_c + 2dh3dgal_c","officialName":"Galactonate dehydratase","geneAssociation":"b4478","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"GALCTNLt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + galctn__L_p --> h_c + galctn__L_c","officialName":"L-galactonate transport via proton symport (periplasm)","geneAssociation":"b4356","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GALCTNLtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"galctn__L_e <==> galctn__L_p","officialName":"L-galactonate transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b1377 or b0929 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GALCTNt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + galctn__D_p --> h_c + galctn__D_c","officialName":"D-galactonate transport via proton symport (periplasm)","geneAssociation":"b3691","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GALCTNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"galctn__D_e <==> galctn__D_p","officialName":"D-galactonate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GALCTt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + galct__D_p <==> h_c + 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{"abbreviation":"GALURt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + galur_p <==> h_c + galur_c","officialName":"D-galacturonate transport via proton symport, reversible (periplasm)","geneAssociation":"b3093","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GALURtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"galur_e <==> galur_p","officialName":"D-galacturonate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GALUi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + utp_c + g1p_c --> ppi_c + udpg_c","officialName":"UTP-glucose-1-phosphate uridylyltransferase (irreversible)","geneAssociation":"b1236","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"GALabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + gal_p --> adp_c + h_c + pi_c + gal_c","officialName":"D-galactose transport via ABC system 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{"abbreviation":"GAMAN6Ptex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"gam6p_e <==> gam6p_p","officialName":"D-glucosamine 6-phosphate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GAMptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + gam_p --> pyr_c + gam6p_c","officialName":"D-glucosamine transport via PEP:Pyr PTS (periplasm)","geneAssociation":"b1817 and b1818 and b1819 and b2415 and b2416","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GAMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"gam_e <==> gam_p","officialName":"D-glucosamine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GAPD","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + nad_c + g3p_c <==> h_c + nadh_c + 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{"abbreviation":"GCALDD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + gcald_c --> (2) h_c + nadh_c + glyclt_c","officialName":"Glycolaldehyde dehydrogenase","geneAssociation":"b1415","subsystem":"Folate Metabolism"} {"abbreviation":"GDMANE","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"gdpddman_c --> gdpofuc_c","officialName":"GDP-4-dehydro-6-deoxy-D-mannose epimerase","geneAssociation":"b2052","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"GDPDPK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + gdp_c --> h_c + amp_c + ppgpp_c","officialName":"GDP diphosphokinase","geneAssociation":"b2784 or b3650","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"GDPMNH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + gdpmann_c --> h_c + gdp_c + man_c","officialName":"GDP-mannose mannosyl hydrolase","geneAssociation":"b2051","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"GDPMNP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + gdpmann_c --> (2) h_c + gmp_c + man1p_c","officialName":"GDP-mannose phyrophosphatase","geneAssociation":"b2467","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"GDPTPDP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + gdptp_c --> ppi_c + gtp_c","officialName":"Guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase","geneAssociation":"b3650","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"GDPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"gdp_e <==> gdp_p","officialName":"GDP transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0929 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GF6PTA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"gln__L_c + f6p_c --> glu__L_c + gam6p_c","officialName":"Glutamine-fructose-6-phosphate transaminase","geneAssociation":"b3729","subsystem":"Cell 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{"abbreviation":"GLXCL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + (2) glx_c --> co2_c + 2h3oppan_c","officialName":"Glyoxalate carboligase","geneAssociation":"b0507","subsystem":"Glyoxylate Metabolism"} {"abbreviation":"GLYALDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glyald_e <==> glyald_p","officialName":"Glyceraldehyde transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GLYALDtpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glyald_p <==> glyald_c","officialName":"Glyceraldehyde facilitated diffusion (periplasm)","geneAssociation":"b3927","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GLYAT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + gly_c <==> coa_c + 2aobut_c","officialName":"Glycine C-acetyltransferase","geneAssociation":"b3617","subsystem":"Glycine and Serine Metabolism"} {"abbreviation":"GLYBabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + glyb_p --> adp_c + h_c + pi_c + glyb_c","officialName":"Glycine betaine transport via ABC system (periplasm)","geneAssociation":"b2128 and b2129 and b2130 and b2131","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GLYBt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + glyb_p --> h_c + glyb_c","officialName":"Glycine betaine transport via proton symport (periplasm)","geneAssociation":"b1801 or b4111","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GLYBtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glyb_e <==> glyb_p","officialName":"Glycine betaine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GLYC2Pabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + glyc2p_p --> adp_c + h_c + pi_c + 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{"abbreviation":"GLYt4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"na1_p + gly_p --> na1_c + gly_c","officialName":"Glycine transport in via sodium symport (periplasm)","geneAssociation":"b0007","subsystem":"Transport, Inner Membrane"} {"abbreviation":"GLYtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"gly_e <==> gly_p","officialName":"Glycine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"GMAND","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"gdpmann_c --> h2o_c + gdpddman_c","officialName":"GDP-D-mannose dehydratase","geneAssociation":"b2053","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"GMHEPAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + gmhep1p_c --> ppi_c + adphep_DD_c","officialName":"D-glycero-D-manno-hepose 1-phosphate adenyltransferase","geneAssociation":"b3052","subsystem":"Lipopolysaccharide 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{"abbreviation":"GUI1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glcur_c <==> fruur_c","officialName":"Glucuronate isomerase (D-glucuronate)","geneAssociation":"b3092","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"GUI2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"galur_c <==> tagur_c","officialName":"Glucuronate isomerase (D-galacturonate)","geneAssociation":"b3092","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"GUR1PPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + glcur1p_p --> pi_p + glcur_p","officialName":"Glucuronate 1-phosphate phosphatase (periplasm)","geneAssociation":"","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"H2O2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o2_e <==> h2o2_p","officialName":"Hydrogen peroxide transport via diffusion (external)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"H2Otex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_e <==> h2o_p","officialName":"H2O transport via diffusion (extracellular to periplasm)","geneAssociation":"s0001 or b0957 or b3875 or b2215 or b0241 or b1319 or b1377 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"H2Otpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p <==> h2o_c","officialName":"H2O transport via diffusion (periplasm)","geneAssociation":"s0001 or b0875","subsystem":"Transport, Inner Membrane"} {"abbreviation":"H2SO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) o2_c + h2s_c --> (2) h_c + so4_c","officialName":"Hydrogen sulfide oxidation","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"H2St1pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2s_c --> h2s_p","officialName":"H2s transport (periplasm)","geneAssociation":"s0001","subsystem":"Transport, Inner Membrane"} {"abbreviation":"H2Stex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2s_e <==> h2s_p","officialName":"H2s transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"H2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2_e <==> h2_p","officialName":"Hydrogen transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"H2tpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2_p <==> h2_c","officialName":"Hydrogen transport diffusion (periplasm)","geneAssociation":"s0001","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HACD1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + aacoa_c <==> nad_c + 3hbcoa_c","officialName":"3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)","geneAssociation":"b3846 or 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{"abbreviation":"HADPCOADH3","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + 3hadpcoa_c <==> h_c + nadh_c + oxadpcoa_c","officialName":"3-hydroxyadipyl-CoA dehydrogenase (NAD+)","geneAssociation":"b1395","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"HBZOPT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4hbz_c + octdp_c --> ppi_c + 3ophb_c","officialName":"Hydroxybenzoate octaprenyltransferase","geneAssociation":"b4040","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"HCINNMt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + 3hcinnm_p <==> h_c + 3hcinnm_c","officialName":"3-hydroxycinnamic acid transport via proton symport, reversible (periplasm)","geneAssociation":"b0353","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HCINNMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3hcinnm_e <==> 3hcinnm_p","officialName":"3-hydroxycinnamic acid transport via diffusion (extracellular to 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{"abbreviation":"HEX7","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + fru_c --> adp_c + h_c + f6p_c","officialName":"Hexokinase (D-fructose:ATP)","geneAssociation":"b0394","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"HEXt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + hxa_p <==> h_c + hxa_c","officialName":"Hexanoate transport via proton symport, reversible (periplasm)","geneAssociation":"b2223","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HG2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + hg2_c --> adp_c + h_c + pi_c + hg2_p","officialName":"Mercury (Hg+2) ABC transporter (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"HG2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + hg2_c --> h_c + hg2_p","officialName":"Mercury (Hg+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915","subsystem":"Inorganic Ion Transport 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{"abbreviation":"HISabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + his__L_p --> adp_c + h_c + pi_c + his__L_c","officialName":"L-histidine transport via ABC system (periplasm)","geneAssociation":"b2309 and b2307 and b2306 and b2308","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HISt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + his__L_p <==> h_c + his__L_c","officialName":"L-histidine reversible transport via proton symport (periplasm)","geneAssociation":"b0112","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HIStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"his__L_e <==> his__L_p","officialName":"L-histidine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"HKNDDH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + hkndd_c --> h_c + succ_c + 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h_c + hom__L_p","officialName":"L-homoserineserine efflux via proton symport","geneAssociation":"b0813 or b3824","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HOMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"hom__L_e <==> hom__L_p","officialName":"L-homoserine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"HOPNTAL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"4h2opntn_c --> acald_c + pyr_c","officialName":"4-hydroxy-2-oxopentanoate aldolase","geneAssociation":"b0352","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"HPPK2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + 6hmhpt_c --> h_c + amp_c + 6hmhptpp_c","officialName":"6-hydroxymethyl-dihydropterin pyrophosphokinase","geneAssociation":"b0142","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"HPPPNDO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + dhpppn_c --> h_c + hkndd_c","officialName":"2,3-dihydroxypheylpropionate 1,2-dioxygenase","geneAssociation":"b0348","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"HPPPNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + 3hpppn_p <==> h_c + 3hpppn_c","officialName":"3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm)","geneAssociation":"b0353","subsystem":"Transport, Inner Membrane"} {"abbreviation":"HPPPNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"3hpppn_e <==> 3hpppn_p","officialName":"3-(3-hydroxyphenyl)propionate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"HPYRI","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"hpyr_c <==> 2h3oppan_c","officialName":"Hydroxypyruvate 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{"abbreviation":"HYD2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + mqn8_c + h2_c --> (2) h_p + mql8_c","officialName":"Hydrogenase (menaquinone8: 2 protons) (periplasm)","geneAssociation":"(b0972 and b0973 and b0974) or (b2994 and b2995 and b2996 and b2997)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"HYD3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + 2dmmq8_c + h2_c --> (2) h_p + 2dmmql8_c","officialName":"Hydrogenase (Demethylmenaquinone-8: 2 protons) (periplasm)","geneAssociation":"(b0972 and b0973 and b0974) or (b2994 and b2995 and b2996 and b2997)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"HYPOE","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pyam5p_c --> pi_c + pydam_c","officialName":"Hypothetical enyme","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"HYXNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"hxan_e <==> 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{"abbreviation":"I2FE2SS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) fe2_c + (2) iscssh_c + iscu_c --> (6) h_c + fad_c + (2) iscs_c + iscu_2fe2s_c","officialName":"ISC [2Fe-2S] Synthesis","geneAssociation":"b3807 and b2530 and b2529","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"I2FE2SS2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"fadh2_c + (2) fe2_c + (2) iscssh_c + iscu_2fe2s_c --> (6) h_c + fad_c + (2) iscs_c + iscu_2fe2s2_c","officialName":"ISC [2Fe-2S] Synthesis II","geneAssociation":"b3807 and b2530 and b2529","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"I2FE2ST","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + iscu_2fe2s_c --> 2fe2s_c + iscu_c","officialName":"ISC [2Fe-2S] Transfer","geneAssociation":"b2528 and b2529","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"I4FE4SR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + fadh2_c + iscu_2fe2s2_c 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{"abbreviation":"IMPC","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + imp_c <==> fprica_c","officialName":"IMP cyclohydrolase","geneAssociation":"b4006","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"IMPD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + imp_c --> h_c + nadh_c + xmp_c","officialName":"IMP dehydrogenase","geneAssociation":"b2508","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"IMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"imp_e <==> imp_p","officialName":"IMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"INDOLEt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + indole_c --> h_p + indole_p","officialName":"Indole transport via proton symport, irreversible (periplasm)","geneAssociation":"(b3265 and b3266) and b3035","subsystem":"Transport, Inner 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Membrane"} {"abbreviation":"INStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ins_e <==> ins_p","officialName":"Inosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0411","subsystem":"Transport, Outer Membrane"} {"abbreviation":"IPDDI","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ipdp_c <==> dmpp_c","officialName":"Isopentenyl-diphosphate D-isomerase","geneAssociation":"b2889","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"IPDPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + h2mb4p_c --> h2o_c + nad_c + ipdp_c","officialName":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)","geneAssociation":"b0029","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"IPMD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + 3c2hmp_c --> h_c + nadh_c + 3c4mop_c","officialName":"3-isopropylmalate dehydrogenase","geneAssociation":"b0073","subsystem":"Valine, 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{"abbreviation":"LALALGLUtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"LalaLglu_e <==> LalaLglu_p","officialName":"L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b1377 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"LALALGLUtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + LalaLglu_p --> h_c + LalaLglu_c","officialName":"L-alanyl-L-glutamate transport in via proton symport (periplasm)","geneAssociation":"b1634 or b3496 or b4130 or b0709","subsystem":"Transport, Inner Membrane"} {"abbreviation":"LALDO2x","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + mthgxl_c --> nad_c + lald__D_c","officialName":"D-Lactaldehyde:NAD+ 1-oxidoreductase","geneAssociation":"b3945","subsystem":"Methylglyoxal Metabolism"} {"abbreviation":"LALDO3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + mthgxl_c --> nadp_c + 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{"abbreviation":"LDH_D","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + lac__D_c <==> h_c + nadh_c + pyr_c","officialName":"D-lactate dehydrogenase","geneAssociation":"b2133 or b1380","subsystem":"Pyruvate Metabolism"} {"abbreviation":"LDH_D2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"lac__D_c + q8_c --> pyr_c + q8h2_c","officialName":"D-lactate dehydrogenase","geneAssociation":"b2133","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"LEUTAi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"glu__L_c + 4mop_c --> akg_c + leu__L_c","officialName":"Leucine transaminase (irreversible)","geneAssociation":"b3770 or b4054","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"LEUTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + leu__L_c + trnaleu_c --> amp_c + ppi_c + leutrna_c","officialName":"Leucyl-tRNA synthetase","geneAssociation":"b0642","subsystem":"tRNA Charging"} {"abbreviation":"LEUabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + leu__L_p --> adp_c + h_c + pi_c + leu__L_c","officialName":"L-leucine transport via ABC system (periplasm)","geneAssociation":"(b3454 and b3455 and b3457 and b3460 and b3456) or (b3454 and b3455 and b3457 and b3458 and b3456)","subsystem":"Transport, Inner Membrane"} {"abbreviation":"LEUt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + leu__L_p <==> h_c + leu__L_c","officialName":"L-leucine reversible transport via proton symport (periplasm)","geneAssociation":"b0401","subsystem":"Transport, Inner Membrane"} {"abbreviation":"LEUtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"leu__L_e <==> leu__L_p","officialName":"L-leucine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"LGTHL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mthgxl_c + gthrd_c 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{"abbreviation":"LPLIPAL1E140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpe140_p --> h_p + ttdca_p + g3pe_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL1E141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpe141_p --> h_p + ttdcea_p + g3pe_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL1E160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpe160_p --> h_p + hdca_p + g3pe_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL1E161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpe161_p --> h_p + 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{"abbreviation":"LPLIPAL1G161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpg161_p --> h_p + hdcea_p + g3pg_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL1G180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpg180_p --> h_p + ocdca_p + g3pg_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL1G181pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + 1agpg181_p --> h_p + ocdcea_p + g3pg_p","officialName":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm)","geneAssociation":"b0494","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2A120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2ddecg3p_c --> (2) h_c + ddca_c + 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{"abbreviation":"LPLIPAL2ATG120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg120_c + pg120_c --> g3pg_c + apg120_c","officialName":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2ATG140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg140_c + pg140_c --> g3pg_c + apg140_c","officialName":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2ATG141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg141_c + pg141_c --> g3pg_c + apg141_c","officialName":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2ATG160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2agpg160_c + pg160_c --> g3pg_c 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{"abbreviation":"LPLIPAL2E160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpe160_c --> h_c + hdca_c + g3pe_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2E161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpe161_c --> h_c + hdcea_c + g3pe_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2E180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpe180_c --> h_c + ocdca_c + g3pe_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2E181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpe181_c --> h_c + ocdcea_c + 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{"abbreviation":"LPLIPAL2G160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpg160_c --> h_c + hdca_c + g3pg_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2G161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpg161_c --> h_c + hdcea_c + g3pg_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2G180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpg180_c --> h_c + ocdca_c + g3pg_c","officialName":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)","geneAssociation":"b3825","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"LPLIPAL2G181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2agpg181_c --> h_c + ocdcea_c + g3pg_c","officialName":"Lysophospholipase L2 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{"abbreviation":"MALDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"mal__D_e <==> mal__D_p","officialName":"D-Malate transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b1377 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MALS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + accoa_c + glx_c --> h_c + coa_c + mal__L_c","officialName":"Malate synthase","geneAssociation":"b4014 or b2976","subsystem":"Anaplerotic Reactions"} {"abbreviation":"MALTATr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + malt_c <==> coa_c + acmalt_c","officialName":"Maltose O-acetyltransferase","geneAssociation":"b0459","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MALTHXabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + malthx_p --> adp_c + h_c + pi_c + malthx_c","officialName":"Maltohexaose transport via ABC system (periplasm)","geneAssociation":"b4034 and b4033 and b4032 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{"abbreviation":"MAN1PT2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + gdp_c + man1p_c --> pi_c + gdpmann_c","officialName":"Mannose-1-phosphate guanylyltransferase (GDP)","geneAssociation":"b2049","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"MAN6PI","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"man6p_c <==> f6p_c","officialName":"Mannose-6-phosphate isomerase","geneAssociation":"b1613","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MAN6Pt6_2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) pi_c + man6p_p --> (2) pi_p + man6p_c","officialName":"Mannose-6-phosphate transport via phosphate antiport (periplasm)","geneAssociation":"b3666","subsystem":"Transport, Inner Membrane"} {"abbreviation":"MAN6Ptex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"man6p_e <==> man6p_p","officialName":"Mannose 6-phosphate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MANAO","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + mana_c <==> h_c + nadh_c + fruur_c","officialName":"Mannonate oxidoreductase","geneAssociation":"b4323","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MANGLYCptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + manglyc_p --> pyr_c + man6pglyc_c","officialName":"2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm)","geneAssociation":"b0731 and b2415 and b2416","subsystem":"Transport, Inner Membrane"} {"abbreviation":"MANGLYCtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"manglyc_e <==> manglyc_p","officialName":"2-O-alpha-mannosyl-D-glycerate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MANPGH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + man6pglyc_c --> glyc__R_c + man6p_c","officialName":"2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase","geneAssociation":"b0732","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MANptspp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pep_c + man_p --> pyr_c + man6p_c","officialName":"D-mannose transport via PEP:Pyr PTS (periplasm)","geneAssociation":"b1817 and b1818 and b1819 and b2415 and b2416","subsystem":"Transport, Inner Membrane"} {"abbreviation":"MANtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"man_e <==> man_p","officialName":"D-mannose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MCITD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2mcit_c --> h2o_c + 2mcacn_c","officialName":"2-methylcitrate dehydratase","geneAssociation":"b0334","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MCITL2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"micit_c <==> pyr_c + succ_c","officialName":"Methylisocitrate lyase","geneAssociation":"b0331","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MCITS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ppcoa_c + oaa_c --> h_c + coa_c + 2mcit_c","officialName":"2-methylcitrate synthase","geneAssociation":"b0333","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MCOATA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ACP_c + malcoa_c <==> malACP_c + coa_c","officialName":"Malonyl-CoA-ACP transacylase","geneAssociation":"b1094 and b1092","subsystem":"Membrane Lipid Metabolism"} {"abbreviation":"MCPST","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"cyan_c + mercppyr_c --> h_c + pyr_c + tcynt_c","officialName":"3-mercaptopyruvate sulfurtransferase","geneAssociation":"b2521","subsystem":"Cysteine Metabolism"} {"abbreviation":"MCTP1App","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"murein5p5p_p --> ala__D_p + murein5px4p_p","officialName":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)","geneAssociation":"b0084 or b0635 or b0149 or b3396","subsystem":"Murein Biosynthesis"} {"abbreviation":"MCTP1Bpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"murein5p5p_p --> alaala_p + murein5px3p_p","officialName":"Murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)","geneAssociation":"b0149 or b3396","subsystem":"Murein Biosynthesis"} {"abbreviation":"MCTP2App","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"murein5p5p5p_p --> (2) ala__D_p + murein5px4px4p_p","officialName":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)","geneAssociation":"b0084 or b0635 or b3396 or b0149","subsystem":"Murein Biosynthesis"} {"abbreviation":"MDDCP1pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein5px4p_p --> ala__D_p + 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b2010","subsystem":"Murein Biosynthesis"} {"abbreviation":"MDDCP5pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein5p3p_p --> ala__D_p + murein4p3p_p","officialName":"Murein D,D-carboxypeptidase (murein5p3p) (periplasm)","geneAssociation":"b0632 or b3182 or b0839 or b2010","subsystem":"Murein Biosynthesis"} {"abbreviation":"MDDEP1pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein4px4p_p --> murein4p4p_p","officialName":"Murein D,D-endopeptidase (murein4px4p) (periplasm)","geneAssociation":"b3182 or b2328 or b2134","subsystem":"Murein Recycling"} {"abbreviation":"MDDEP2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein3px4p_p --> murein4p3p_p","officialName":"Murein D,D-endopeptidase (murein3px4p) (periplasm)","geneAssociation":"b3182 or b2328 or b2134","subsystem":"Murein Recycling"} {"abbreviation":"MDDEP3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein5px4p_p --> murein5p4p_p","officialName":"Murein 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{"abbreviation":"METDabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + met__D_p --> adp_c + h_c + pi_c + met__D_c","officialName":"D-methionine transport via ABC system (periplasm)","geneAssociation":"b0198 and b0199 and b0197","subsystem":"Transport, Inner Membrane"} {"abbreviation":"METDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"met__D_e <==> met__D_p","officialName":"D-methionine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"METOX1s","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o2_c + met__L_c --> h2o_c + metsox_S__L_c","officialName":"Methionine oxidation (spontaneous)","geneAssociation":"s0001","subsystem":"Methionine Metabolism"} {"abbreviation":"METOX2s","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o2_c + met__L_c --> h2o_c + metsox_R__L_c","officialName":"Methionine oxidation 2 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{"abbreviation":"MGSA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dhap_c --> pi_c + mthgxl_c","officialName":"Methylglyoxal synthase","geneAssociation":"b0963","subsystem":"Methylglyoxal Metabolism"} {"abbreviation":"MI1PP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + mi1p__D_c --> pi_c + inost_c","officialName":"Myo-inositol 1-phosphatase","geneAssociation":"b2533","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"MICITDr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2mcacn_c <==> micit_c","officialName":"2-methylisocitrate dehydratase","geneAssociation":"b0118","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MINCYCtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"mincyc_e <==> mincyc_p","officialName":"Minocycline transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0929 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MINCYCtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + mincyc_p --> h_c + mincyc_e","officialName":"Minocycline transport via TolC system","geneAssociation":"(b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)","subsystem":"Transport, Outer Membrane"} {"abbreviation":"MINOHPtexi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"minohp_e --> minohp_p","officialName":"Myo-inositol phosphate transport via diffusion (extracellular to periplasm)","geneAssociation":"","subsystem":"Transport, Outer Membrane"} {"abbreviation":"MLDCP1App","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein5px4p_p --> alaala_p + murein3px4p_p","officialName":"Murein L,D-carboxypeptidase (murein5px4p) (periplasm)","geneAssociation":"","subsystem":"Murein Biosynthesis"} {"abbreviation":"MLDCP1Bpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + murein4p4p_p --> ala__D_p + murein4p3p_p","officialName":"Murein L,D-carboxypeptidase (murein4p4p) 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{"abbreviation":"MLTP2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + malthx_c <==> maltpt_c + g1p_c","officialName":"Maltodextrin phosphorylase (maltohexaose)","geneAssociation":"b3417","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MLTP3","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + malthp_c <==> malthx_c + g1p_c","officialName":"Maltodextrin phosphorylase (maltoheptaose)","geneAssociation":"b3417","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MMCD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + mmcoa__S_c --> co2_c + ppcoa_c","officialName":"Methylmalonyl-CoA decarboxylase","geneAssociation":"b2919","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MMETt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + mmet_p --> h_c + mmet_c","officialName":"S-methylmethionine permease (periplasm)","geneAssociation":"b0260","subsystem":"Transport, Inner Membrane"} {"abbreviation":"MMETtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"mmet_e <==> mmet_p","officialName":"S-methyl-L-methionine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MMM","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"succoa_c --> mmcoa__S_c","officialName":"Methylmalonyl-CoA mutase","geneAssociation":"b2917","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"MN2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + mn2_c --> h_c + mn2_p","officialName":"Manganese (Mn+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915 or b0752","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"MN2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mn2_p --> mn2_c","officialName":"Manganese transport in via permease (no H+)","geneAssociation":"b3040","subsystem":"Inorganic Ion Transport and 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{"abbreviation":"MNt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + mn2_p --> h_c + mn2_c","officialName":"Manganese (Mn+2) transport in via proton symport (periplasm)","geneAssociation":"b2392","subsystem":"Transport, Inner Membrane"} {"abbreviation":"MNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"mn2_e <==> mn2_p","officialName":"Manganese (Mn+2) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"MOADSUx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nadh_c + iscssh_c + moadamp_c --> amp_c + nad_c + iscs_c + moadcosh_c","officialName":"MoaD sulfuration (nadh, assumed)","geneAssociation":"b2530 and b0784","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"MOAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ckdo_c + lipidA_c --> h_c + cmp_c + kdolipid4_c","officialName":"3-deoxy-D-manno-octulosonic acid 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{"abbreviation":"NACODA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + acg5sa_c --> ac_c + glu5sa_c","officialName":"N-acetylornithine deacetylase","geneAssociation":"b3957","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"NACtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nac_e <==> nac_p","officialName":"Nicotinic acid transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"NACtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nac_p --> nac_c","officialName":"Nicotinic acid uptake (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"NADDP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c --> (2) h_c + amp_c + nmn_c","officialName":"NAD diphosphatase","geneAssociation":"b3996 or b2411","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NADH10","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + mqn8_c --> nad_c + mql8_c","officialName":"NADH dehydrogenase (menaquinone-8 & 0 protons)","geneAssociation":"b1109","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADH16pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + nadh_c + q8_c --> (3) h_p + nad_c + q8h2_c","officialName":"NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)","geneAssociation":"b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADH17pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + nadh_c + mqn8_c --> (3) h_p + nad_c + mql8_c","officialName":"NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)","geneAssociation":"b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADH18pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + nadh_c + 2dmmq8_c --> (3) h_p + nad_c + 2dmmql8_c","officialName":"NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)","geneAssociation":"b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADH5","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + q8_c --> nad_c + q8h2_c","officialName":"NADH dehydrogenase (ubiquinone-8 )","geneAssociation":"b1109","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADH9","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + 2dmmq8_c --> nad_c + 2dmmql8_c","officialName":"NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)","geneAssociation":"b1109","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + nad_c --> adp_c + h_c + nadp_c","officialName":"NAD kinase","geneAssociation":"b2615","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NADN","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c --> h_c + adprib_c + ncam_c","officialName":"NAD nucleosidase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NADPHQR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + q8_c --> nadp_c + q8h2_c","officialName":"NADPH Quinone Reductase (Ubiquinone-8)","geneAssociation":"b3028","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADPHQR3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + mqn8_c --> nadp_c + mql8_c","officialName":"NADPH Quinone Reductase (Menaquinone-8)","geneAssociation":"b3028","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADPHQR4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + 2dmmq8_c --> nadp_c + 2dmmql8_c","officialName":"NADPH Quinone Reductase (2-Demethylmenaquinone-8)","geneAssociation":"b3028","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NADPPPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nadp_c --> pi_c + nad_c","officialName":"NADP phosphatase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NADS1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + nh4_c + dnad_c --> h_c + amp_c + ppi_c + nad_c","officialName":"NAD synthase (nh3)","geneAssociation":"b1740","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NADTRHD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + nadph_c --> nadh_c + nadp_c","officialName":"NAD transhydrogenase","geneAssociation":"b3962 or (b1602 and b1603)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NAMNPP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + prpp_c + nac_c --> adp_c + pi_c + ppi_c + nicrnt_c","officialName":"Nicotinic acid mononucleotide pyrophosphorylase","geneAssociation":"b0931","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NAt3_1p5pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(3) h_p + (2) na1_c --> (3) h_c + (2) na1_p","officialName":"Sodium proton antiporter (H:NA is 1.5) (periplasm)","geneAssociation":"b1186","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NAt3_2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_p + na1_c --> (2) h_c + na1_p","officialName":"Sodium proton antiporter (H:NA is 2) (periplasm)","geneAssociation":"b0019","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NAt3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + na1_c --> h_c + na1_p","officialName":"Sodium transport out via proton antiport (cytoplasm to 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(2) no_c --> h2o_c + nad_c + n2o_c","officialName":"NADH:flavorubredoxin oxidoreductase","geneAssociation":"b2710 and b2711","subsystem":"Nitrogen Metabolism"} {"abbreviation":"NI2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + ni2_c --> adp_c + h_c + pi_c + ni2_p","officialName":"Nickle (Ni+2) ABC transporter (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NI2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ni2_c --> h_c + ni2_p","officialName":"Nickle (Ni+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915 or b0752","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NI2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ni2_e <==> ni2_p","officialName":"Nickel transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"NI2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ni2_p --> ni2_c","officialName":"Nickel (+2) transport in via permease (no H+)","geneAssociation":"b3816","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NI2uabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + ni2_p --> adp_c + h_c + pi_c + ni2_c","officialName":"Nickel transport via ABC system (uptake, periplasm)","geneAssociation":"(b3476 and b3477 and b3478 and b3479 and b3480) or b4242","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NMNAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + nmn_c --> ppi_c + nad_c","officialName":"Nicotinamide-nucleotide adenylyltransferase","geneAssociation":"b4390 or b0639","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NMNDA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nmn_c --> nh4_c + nicrnt_c","officialName":"Nicotinamide-nucleotide amidase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NMNN","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nmn_c --> h_c + r5p_c + ncam_c","officialName":"NMN nucleosidase","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NMNPtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nmn_p --> nmn_c","officialName":"NMN permease (periplasm)","geneAssociation":"b0751","subsystem":"Transport, Inner Membrane"} {"abbreviation":"NMNt7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nmn_p --> h_c + r5p_c + ncam_c","officialName":"NMN transport via NMN glycohydrolase (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"NMNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nmn_e <==> nmn_p","officialName":"NMN transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"NNAM","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ncam_c --> nh4_c + nac_c","officialName":"Nicotinamidase","geneAssociation":"b1768","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NNATr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + nicrnt_c <==> ppi_c + dnad_c","officialName":"Nicotinate-nucleotide adenylyltransferase","geneAssociation":"b0639","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NNDMBRT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nicrnt_c + dmbzid_c --> h_c + nac_c + 5prdmbz_c","officialName":"Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase","geneAssociation":"b1991","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NNDPR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + prpp_c + quln_c --> ppi_c + co2_c + nicrnt_c","officialName":"Nicotinate-nucleotide diphosphorylase (carboxylating)","geneAssociation":"b0109","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"NO2t2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + no2_p <==> h_c + no2_c","officialName":"Nitrite transport in via proton symport, reversible (periplasm)","geneAssociation":"b3367 or b1223","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NO2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"no2_e <==> no2_p","officialName":"Nitrite transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"NO3R1bpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"q8h2_c + no3_p --> h2o_p + q8_c + no2_p","officialName":"Nitrate reductase (Ubiquinol-8)","geneAssociation":"(b2203 and b2206) and b2202 and b2205 and b2204","subsystem":"Nitrogen Metabolism"} {"abbreviation":"NO3R1pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + q8h2_c + no3_c --> h2o_c + (2) h_p + q8_c + no2_c","officialName":"Nitrate reductase (Ubiquinol-8) (periplasm)","geneAssociation":"(b1465 and b1466 and b1467 and b1468) or (b1224 and b1225 and b1226 and b1227)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NO3R2bpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mql8_c + no3_p --> h2o_p + mqn8_c + no2_p","officialName":"Nitrate reductase (Menaquinol-8) (periplasm)","geneAssociation":"(b2203 and b2206) and b2202","subsystem":"Nitrogen Metabolism"} {"abbreviation":"NO3R2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + mql8_c + no3_c --> h2o_c + (2) h_p + mqn8_c + no2_c","officialName":"Nitrate reductase (Menaquinol-8) (periplasm)","geneAssociation":"(b1465 and b1466 and b1467 and b1468) or (b1224 and b1225 and b1226 and b1227)","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"NO3t7pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"no2_c + no3_p --> no2_p + no3_c","officialName":"Nitrate transport in via nitrite antiport (periplasm)","geneAssociation":"b1223 or b1469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"NO3tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"no3_e <==> no3_p","officialName":"Nitrate transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b0241 or b0929 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"NODOx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nadh_c + (2) o2_c + (2) no_c --> h_c + nad_c + (2) no3_c","officialName":"Nitric oxide dioxygenase","geneAssociation":"b2552","subsystem":"Nitrogen Metabolism"} {"abbreviation":"NODOy","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nadph_c + (2) o2_c + (2) no_c --> h_c + nadp_c + (2) no3_c","officialName":"Nitric oxide 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Salvage Pathway"} {"abbreviation":"NTD11pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + imp_p --> pi_p + ins_p","officialName":"5'-nucleotidase (IMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD12","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dimp_c --> pi_c + din_c","officialName":"5'-nucleotidase (dIMP)","geneAssociation":"b2291 or b2744","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD12pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + dimp_p --> pi_p + din_p","officialName":"5'-nucleotidase (dIMP) (periplasm)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD1pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + dump_p --> pi_p + duri_p","officialName":"5'-nucleotidase (dUMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + ump_c --> pi_c + uri_c","officialName":"5'-nucleotidase (UMP)","geneAssociation":"b2744 or b4374","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + ump_p --> pi_p + uri_p","officialName":"5'-nucleotidase (UMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + dcmp_c --> pi_c + dcyt_c","officialName":"5'-nucleotidase (dCMP)","geneAssociation":"b2744 or b2291","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + dcmp_p --> pi_p + dcyt_p","officialName":"5'-nucleotidase (dCMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + cmp_c --> pi_c + 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{"abbreviation":"NTD8pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + dgmp_p --> pi_p + dgsn_p","officialName":"5'-nucleotidase (dGMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD9","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + gmp_c --> pi_c + gsn_c","officialName":"5'-nucleotidase (GMP)","geneAssociation":"b2744","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTD9pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + gmp_p --> pi_p + gsn_p","officialName":"5'-nucleotidase (GMP)","geneAssociation":"b0480 or b4055","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"NTP1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c --> adp_c + h_c + pi_c","officialName":"Nucleoside-triphosphatase (ATP)","geneAssociation":"b0650 or b4161","subsystem":"Biomass and maintenance functions"} {"abbreviation":"NTP10","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + itp_c --> h_c 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{"abbreviation":"O16AT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + ragund_c --> coa_c + aragund_c","officialName":"Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis)","geneAssociation":"b2033","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"O16AUNDtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o16aund_c --> o16aund_p","officialName":"O16 antigen (flippase, cytoplasm to periplasm)","geneAssociation":"b2037","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"O16GALFT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"garagund_c + udpgalfur_c --> h_c + udp_c + gfgaragund_c","officialName":"Galactofuranosyltransferase (LPS O16 antigen biosynthesis)","geneAssociation":"b2034","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"O16GLCT1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"udpg_c + aragund_c --> h_c + udp_c + 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{"abbreviation":"O2tpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"o2_p <==> o2_c","officialName":"O2 transport via diffusion (periplasm)","geneAssociation":"s0001","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"OAADC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + oaa_c --> co2_c + pyr_c","officialName":"Oxaloacetate decarboxylase","geneAssociation":"b1850","subsystem":"Pyruvate Metabolism"} {"abbreviation":"OBTFL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"coa_c + 2obut_c --> ppcoa_c + for_c","officialName":"2-Oxobutanoate formate lyase","geneAssociation":"((b0902 and b0903) and b2579) or (b0902 and b0903) or (b0902 and b3114)","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"OCBT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"orn_c + cbp_c <==> h_c + pi_c + citr__L_c","officialName":"Ornithine carbamoyltransferase","geneAssociation":"b4254 or b0273","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"OCDCAtexi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ocdca_e --> ocdca_p","officialName":"Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)","geneAssociation":"b2344","subsystem":"Transport, Outer Membrane"} {"abbreviation":"OCDCEAtexi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ocdcea_e --> ocdcea_p","officialName":"Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm)","geneAssociation":"b2344","subsystem":"Transport, Outer Membrane"} {"abbreviation":"OCTAtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"octa_e <==> octa_p","officialName":"Octanoate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"OCTDPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(5) ipdp_c + frdp_c --> (5) ppi_c + octdp_c","officialName":"Octaprenyl 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{"abbreviation":"OMCDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 3c4mop_c --> co2_c + 4mop_c","officialName":"2-Oxo-4-methyl-3-carboxypentanoate decarboxylation","geneAssociation":"s0001","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"OMMBLHX","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(0.5) o2_c + 2ommbl_c --> 2omhmbl_c","officialName":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase","geneAssociation":"b0662","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"OMMBLHX3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) atp_c + (3) h2o_c + nad_c + 2ommbl_c --> (2) adp_c + (3) h_c + (2) pi_c + nadh_c + 2omhmbl_c","officialName":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (anaerobic)","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"OMPDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + orot5p_c --> co2_c + 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{"abbreviation":"OPHBDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 3ophb_c --> co2_c + 2oph_c","officialName":"Octaprenyl-hydroxybenzoate decarboxylase","geneAssociation":"b3843 and b2311","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"OPHHX","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(0.5) o2_c + 2oph_c --> 2ohph_c","officialName":"2-Octaprenylphenol hydroxylase","geneAssociation":"b3835","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"OPHHX3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) atp_c + (3) h2o_c + nad_c + 2oph_c --> (2) adp_c + (3) h_c + (2) pi_c + nadh_c + 2ohph_c","officialName":"2-Octaprenylphenol hydroxylase (anaerobic)","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"OPMEACPD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"hpmeACP_c --> h2o_c + epmeACP_c","officialName":"3-Oxo-pimeloyl-[ACP] methyl ester 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{"abbreviation":"ORPT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ppi_c + orot5p_c <==> prpp_c + orot_c","officialName":"Orotate phosphoribosyltransferase","geneAssociation":"b3642","subsystem":"Purine and Pyrimidine Biosynthesis"} {"abbreviation":"OXAMTC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + oxur_c --> cbp_c + oxam_c","officialName":"Oxamate transcarbamoylase","geneAssociation":"","subsystem":"Unassigned"} {"abbreviation":"OXCDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + oxalcoa_c --> co2_c + forcoa_c","officialName":"Oxalyl-CoA decarboxylase","geneAssociation":"b2373","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"OXCOAHDH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h2o_c + nadp_c + 2oxpaccoa_c --> (2) h_c + nadph_c + 3oxdhscoa_c","officialName":"Oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+)","geneAssociation":"b1387","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"OXDHCOAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"coa_c + 3oxdhscoa_c --> accoa_c + 23dhacoa_c","officialName":"3-oxo-5,6-dehydrosuberyl-CoA thiolase","geneAssociation":"b1394 and b1397","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"P5CD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h2o_c + nad_c + 1pyr5c_c --> h_c + nadh_c + glu__L_c","officialName":"1-pyrroline-5-carboxylate dehydrogenase","geneAssociation":"b1014","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"P5CR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + nadph_c + 1pyr5c_c --> nadp_c + pro__L_c","officialName":"Pyrroline-5-carboxylate reductase","geneAssociation":"b0386","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"PA120abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pa120_c --> adp_c + h_c + pi_c + pa120_p","officialName":"Phosphatidate transport via ABC system (n-C12:0, 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{"abbreviation":"PA161abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pa161_c --> adp_c + h_c + pi_c + pa161_p","officialName":"Phosphatidate transport via ABC system (n-C16:1, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PA180abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pa180_c --> adp_c + h_c + pi_c + pa180_p","officialName":"Phosphatidate transport via ABC system (n-C18:0, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PA181abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pa181_c --> adp_c + h_c + pi_c + pa181_p","officialName":"Phosphatidate transport via ABC system (n-C18:1, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PACALDt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + pacald_p <==> h_c + pacald_c","officialName":"Phenylacetaldehyde 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{"abbreviation":"PANTS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ala_B_c + pant__R_c --> h_c + amp_c + ppi_c + pnto__R_c","officialName":"Pantothenate synthase","geneAssociation":"b0133","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PAPA120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa120_c --> 12dgr120_c + pi_c","officialName":"Phosphatidate phosphatase (n-C12:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA120pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa120_p --> 12dgr120_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C12:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa140_c --> 12dgr140_c + pi_c","officialName":"Phosphatidate phosphatase (n-C14:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa140_p --> 12dgr140_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C14:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA141","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa141_c --> 12dgr141_c + pi_c","officialName":"Phosphatidate phosphatase (n-C14:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa141_p --> 12dgr141_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C14:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA160","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa160_c --> 12dgr160_c + pi_c","officialName":"Phosphatidate phosphatase (n-C16:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa160_p --> 12dgr160_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C16:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA161","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa161_c --> 12dgr161_c + pi_c","officialName":"Phosphatidate phosphatase (n-C16:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa161_p --> 12dgr161_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C16:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA180","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa180_c --> 12dgr180_c + pi_c","officialName":"Phosphatidate phosphatase (n-C18:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa180_p --> 12dgr180_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C18:0)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pa181_c --> 12dgr181_c + pi_c","officialName":"Phosphatidate phosphatase (n-C18:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPA181pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa181_p --> 12dgr181_p + pi_p","officialName":"Phosphatidate phosphatase (periplasmic, n-C18:1)","geneAssociation":"b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PAPPT3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"udcpp_c + ugmda_c --> ump_c + uagmda_c","officialName":"Phospho-N-acetylmuramoyl-pentapeptide-transferase 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{"abbreviation":"PDE4","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 35cgmp_c --> h_c + gmp_c","officialName":"3',5'-cyclic-nucleotide phosphodiesterase","geneAssociation":"b1489","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"PDH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + coa_c + pyr_c --> nadh_c + co2_c + accoa_c","officialName":"Pyruvate dehydrogenase","geneAssociation":"b0114 and b0115 and b0116","subsystem":"Glycolysis/Gluconeogenesis"} {"abbreviation":"PDX5PO2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + pdx5p_c --> h_c + nadh_c + pydx5p_c","officialName":"Pyridoxine 5'-phosphate oxidase (anaerboic","geneAssociation":"","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PDX5POi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + pdx5p_c --> h2o2_c + pydx5p_c","officialName":"Pyridoxine 5'-phosphate oxidase","geneAssociation":"b1638","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PDX5PS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + phthr_c + dxyl5p_c --> (2) h2o_c + h_c + pi_c + nadh_c + co2_c + pdx5p_c","officialName":"Pyridoxine 5'-phosphate synthase","geneAssociation":"b0052 and b2564","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PDXPP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pdx5p_c --> pi_c + pydxn_c","officialName":"Pyridoxine 5-phosphate phosphatase","geneAssociation":"b0766","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PE120abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pe120_c --> adp_c + h_c + pi_c + pe120_p","officialName":"Phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PE140abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pe140_c --> adp_c + h_c + pi_c + 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{"abbreviation":"PFK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + f6p_c --> adp_c + h_c + fdp_c","officialName":"Phosphofructokinase","geneAssociation":"b3916 or b1723","subsystem":"Glycolysis/Gluconeogenesis"} {"abbreviation":"PFK_2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + tag6p__D_c --> adp_c + h_c + tagdp__D_c","officialName":"Phosphofructokinase","geneAssociation":"b3916","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"PFK_3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + s7p_c --> adp_c + h_c + s17bp_c","officialName":"Phosphofructokinase (s7p)","geneAssociation":"b3916","subsystem":"Pentose Phosphate Pathway"} {"abbreviation":"PFL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"coa_c + pyr_c --> accoa_c + for_c","officialName":"Pyruvate formate lyase","geneAssociation":"(b0902 and b0903) or (b0902 and b3114) or (b3951 and b3952) or ((b0902 and b0903) and b2579)","subsystem":"Pyruvate Metabolism"} {"abbreviation":"PG120abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pg120_c --> adp_c + h_c + pi_c + pg120_p","officialName":"Phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PG140abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pg140_c --> adp_c + h_c + pi_c + pg140_p","officialName":"Phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PG141abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pg141_c --> adp_c + h_c + pi_c + pg141_p","officialName":"Phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)","geneAssociation":"b0914","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PG160abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pg160_c --> adp_c + h_c + pi_c + 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{"abbreviation":"PGL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 6pgl_c --> h_c + 6pgc_c","officialName":"6-phosphogluconolactonase","geneAssociation":"b0767","subsystem":"Pentose Phosphate Pathway"} {"abbreviation":"PGLYCP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + 2pglyc_c --> pi_c + glyclt_c","officialName":"Phosphoglycolate phosphatase","geneAssociation":"b3385","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"PGM","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"2pg_c <==> 3pg_c","officialName":"Phosphoglycerate mutase","geneAssociation":"b3612 or b4395 or b0755","subsystem":"Glycolysis/Gluconeogenesis"} {"abbreviation":"PGMT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"g1p_c <==> g6p_c","officialName":"Phosphoglucomutase","geneAssociation":"b2690 or b0688","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"PGP120abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pgp120_c --> adp_c + h_c + pi_c 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{"abbreviation":"PGPP120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pgp120_c --> pi_c + pg120_c","officialName":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)","geneAssociation":"b1278 or b0418","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGPP120pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pgp120_p --> pi_p + pg120_p","officialName":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)","geneAssociation":"b0418 or b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGPP140","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pgp140_c --> pi_c + pg140_c","officialName":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)","geneAssociation":"b1278 or b0418","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGPP140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pgp140_p --> pi_p + pg140_p","officialName":"Phosphatidylglycerol phosphate phosphatase (periplasm, 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{"abbreviation":"PGPP180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pgp180_p --> pi_p + pg180_p","officialName":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:0)","geneAssociation":"b0418 or b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGPP181","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pgp181_c --> pi_c + pg181_c","officialName":"Phosphatidylglycerol phosphate phosphatase (n-C18:1)","geneAssociation":"b1278 or b0418","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGPP181pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pgp181_p --> pi_p + pg181_p","officialName":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:1)","geneAssociation":"b0418 or b1278","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PGSA120","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"glyc3p_c + cdpdddecg_c --> h_c + cmp_c + pgp120_c","officialName":"Phosphatidylglycerol synthase 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{"abbreviation":"PHEMEtiex","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pheme_p --> pheme_e","officialName":"Protoheme transport irreversible out via diffusion (periplasm to extracellular)","geneAssociation":"","subsystem":"Transport, Outer Membrane"} {"abbreviation":"PHETA1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"akg_c + phe__L_c <==> glu__L_c + phpyr_c","officialName":"Phenylalanine transaminase","geneAssociation":"b4054 or b0928 or b3770","subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism"} {"abbreviation":"PHETRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + phe__L_c + trnaphe_c --> amp_c + ppi_c + phetrna_c","officialName":"Phenylalanyl-tRNA synthetase","geneAssociation":"b1713 and b1714","subsystem":"tRNA Charging"} {"abbreviation":"PHEt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + phe__L_p <==> h_c + phe__L_c","officialName":"L-phenylalanine reversible transport via proton symport 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pi_p","officialName":"Phosphate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"PIuabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + pi_p --> adp_c + h_c + (2) pi_c","officialName":"Phosphate transport via ABC system (uptake, periplasm)","geneAssociation":"b3726 and b3725 and b3727 and b3728","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"PLIPA1A120pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa120_p --> 2ddecg3p_p + ddca_p","officialName":"Phospholipase A1 (phosphatidate, n-C12:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa140_p --> 2tdecg3p_p + ttdca_p","officialName":"Phospholipase A1 (phosphatidate, n-C14:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa141_p --> 2tdec7eg3p_p + ttdcea_p","officialName":"Phospholipase A1 (phosphatidate, n-C14:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa160_p --> 2hdecg3p_p + hdca_p","officialName":"Phospholipase A1 (phosphatidate, n-C16:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa161_p --> 2hdec9eg3p_p + hdcea_p","officialName":"Phospholipase A1 (phosphatidate, n-C16:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa180_p --> 2odecg3p_p + ocdca_p","officialName":"Phospholipase A1 (phosphatidate, n-C18:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1A181pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa181_p --> 2odec11eg3p_p + ocdcea_p","officialName":"Phospholipase A1 (phosphatidate, n-C18:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E120pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe120_p --> h_p + 2agpe120_p + ddca_p","officialName":"Phospholipase A1 (phosphatidylethanolamine, n-C12:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E140pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe140_p --> h_p + 2agpe140_p + ttdca_p","officialName":"Phospholipase A1 (phosphatidylethanolamine, n-C14:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe141_p --> h_p + 2agpe141_p + ttdcea_p","officialName":"Phospholipase A1 (phosphatidylethanolamine, n-C14:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe160_p --> h_p + 2agpe160_p + hdca_p","officialName":"Phospholipase A1 (phosphatidylethanolamine, n-C16:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe161_p --> h_p + 2agpe161_p + hdcea_p","officialName":"Phospholipase A1 (phosphatidylethanolamine, n-C16:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA1E180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pe180_p --> h_p + 2agpe180_p + 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{"abbreviation":"PLIPA2A141pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa141_p --> h_p + ttdcea_p + 1tdec7eg3p_p","officialName":"Phospholipase A2 (phosphatidate, n-C14:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA2A160pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa160_p --> h_p + hdca_p + 1hdecg3p_p","officialName":"Phospholipase A2 (phosphatidate, n-C16:0) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA2A161pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa161_p --> h_p + hdcea_p + 1hdec9eg3p_p","officialName":"Phospholipase A2 (phosphatidate, n-C16:1) (periplasm)","geneAssociation":"b3821","subsystem":"Glycerophospholipid Metabolism"} {"abbreviation":"PLIPA2A180pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + pa180_p --> h_p + ocdca_p + 1odecg3p_p","officialName":"Phospholipase A2 (phosphatidate, 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{"abbreviation":"PTA2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + ppcoa_c --> coa_c + ppap_c","officialName":"Phosphate acetyltransferase","geneAssociation":"b2297","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"PTAr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + accoa_c <==> coa_c + actp_c","officialName":"Phosphotransacetylase","geneAssociation":"b2297 or b2458","subsystem":"Pyruvate Metabolism"} {"abbreviation":"PTHRpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + thrp_p --> pi_p + thr__L_p","officialName":"Phospho-L-threonine phosphatase (periplasmic)","geneAssociation":"b4055","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"PTPATi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + pan4p_c --> ppi_c + dpcoa_c","officialName":"Pantetheine-phosphate adenylyltransferase","geneAssociation":"b3634","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PTRCORNt7pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"orn_c + ptrc_p <==> ptrc_c + orn_p","officialName":"Putrescine/ornithine antiporter (periplasm)","geneAssociation":"b0692","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PTRCTA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"akg_c + ptrc_c --> glu__L_c + 4abutn_c","officialName":"Putrescine Transaminase","geneAssociation":"b3073","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"PTRCabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + ptrc_p --> adp_c + h_c + pi_c + ptrc_c","officialName":"Putrescine transport via ABC system (periplasm)","geneAssociation":"(b0854 and b0855 and b0856 and b0857) or (b1126 and b1125 and b1124 and b1123) or (b1440 and b1441 and b1442 and b1443)","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PTRCt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + ptrc_p --> h_c + ptrc_c","officialName":"Putrescine 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{"abbreviation":"PYDAMtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pydam_p --> pydam_c","officialName":"Pyridoxamine import","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PYDXK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + pydx_c --> adp_c + h_c + pydx5p_c","officialName":"Pyridoxal kinase","geneAssociation":"b1636 or b2418","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PYDXNK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + pydxn_c --> adp_c + h_c + pdx5p_c","officialName":"Pyridoxine kinase","geneAssociation":"b2418","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PYDXNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pydxn_e <==> pydxn_p","officialName":"Pyridoxine transport via diffusion (extracellular)","geneAssociation":"b2215 or b0929 or b1377 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"PYDXNtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pydxn_p --> pydxn_c","officialName":"Pyridoxine import","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PYDXPP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + pydx5p_c --> pi_c + pydx_c","officialName":"Pyridoxal 5-phosphate phosphatase","geneAssociation":"b0446 or b3826 or b0766","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"PYDXtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pydx_e <==> pydx_p","officialName":"Pyridoxal transport via diffusion (extracellular)","geneAssociation":"b2215 or b0929 or b1377 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"PYDXtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"pydx_p --> pydx_c","officialName":"Pyridoxal import","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"PYK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"adp_c + h_c 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{"abbreviation":"RIBtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"rib__D_e <==> rib__D_p","officialName":"Ribose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"RMI","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"rmn_c <==> rml_c","officialName":"L-rhamnose isomerase","geneAssociation":"b3903","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"RMK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + rml_c --> adp_c + h_c + rml1p_c","officialName":"Rhamnulokinase","geneAssociation":"b3904","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"RMNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"rmn_e <==> rmn_p","officialName":"L-rhamnose transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b0241 or b0929 or b1377","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"RMNtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + rmn_p --> h_c + rmn_c","officialName":"L-rhamnose transport via proton symport (periplasm)","geneAssociation":"b3907","subsystem":"Transport, Inner Membrane"} {"abbreviation":"RMPA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"rml1p_c <==> dhap_c + lald__L_c","officialName":"Rhamnulose-1-phosphate aldolase","geneAssociation":"b3902","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"RNDR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"adp_c + trdrd_c --> h2o_c + dadp_c + trdox_c","officialName":"Ribonucleoside-diphosphate reductase (ADP)","geneAssociation":"((b2234 and b2235) and b2582) or ((b2234 and b2235) and b3781)","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"RNDR1b","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"adp_c + grxrd_c --> h2o_c + dadp_c + grxox_c","officialName":"Ribonucleoside-diphosphate reductase (ADP) (glutaredoxin)","geneAssociation":"(b1064 and 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{"abbreviation":"S4FE4SR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + fadh2_c + sufbcd_2fe2s2_c --> fad_c + sufbcd_4fe4s_c","officialName":"SUF [4Fe-4S] Reduction","geneAssociation":"b1683 and b1682 and b1681","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"S4FE4ST","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(4) h_c + sufbcd_4fe4s_c --> 4fe4s_c + sufbcd_c","officialName":"SUF [4Fe-4S] Transfer","geneAssociation":"b1684 and b1683 and b1682 and b1681","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"S7PI","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"s7p_c --> gmhep7p_c","officialName":"Sedoheptulose 7-phosphate isomerase","geneAssociation":"b0222","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"SADH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h2o_c + (2) h_c + sucarg_c --> (2) nh4_c + co2_c + sucorn_c","officialName":"Succinylarginine 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gslnt_c --> nadp_c + gthrd_c + seln_c","officialName":"Selenate glutathione reductase III","geneAssociation":"","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SELNPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + seln_c --> pi_c + amp_c + selnp_c","officialName":"Selenophosphate synthase","geneAssociation":"b1764","subsystem":"Unassigned"} {"abbreviation":"SELR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mql8_c + sel_c --> h2o_c + mqn8_c + slnt_c","officialName":"Selenate reductase","geneAssociation":"b1587 and b1588 and b1589 and b1590","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SELtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"sel_e <==> sel_p","officialName":"Selenate transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b0929 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SELtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_p + sel_p --> (2) h_c + sel_c","officialName":"Selenate transport via proton symport (periplasm)","geneAssociation":"b2422 and b2425 and b2424 and b2423","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SEPHCHCS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + akg_c + ichor_c --> co2_c + 2sephchc_c","officialName":"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase","geneAssociation":"b2264","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"SERASr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h_c + ser__L_c <==> ppi_c + seramp_c","officialName":"(L-seryl)adenylate synthase","geneAssociation":"b0586","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"SERAT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + ser__L_c <==> coa_c + acser_c","officialName":"Serine 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b0355","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"SGDS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + sucglu_c --> glu__L_c + succ_c","officialName":"Succinylglutamate desuccinylase","geneAssociation":"b1744","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"SGSAD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + sucgsa_c --> (2) h_c + nadh_c + sucglu_c","officialName":"Succinylglutamic semialdehyde dehydrogenase","geneAssociation":"b1746","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"SHCHCS3","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2sephchc_c --> pyr_c + 2shchc_c","officialName":"2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase","geneAssociation":"b2263","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"SHCHD2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + dscl_c --> h_c + nadh_c + scl_c","officialName":"Sirohydrochlorin 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cyst__L_c","officialName":"O-succinylhomoserine lyase (L-cysteine)","geneAssociation":"b3939","subsystem":"Methionine Metabolism"} {"abbreviation":"SKMt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + skm_p --> h_c + skm_c","officialName":"Shikimate transport in via proton symport (periplasm)","geneAssociation":"b1981","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SKMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"skm_e <==> skm_p","officialName":"Shikimate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SLNTtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"slnt_e <==> slnt_p","officialName":"Selenite transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b0929 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SLNTtpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + slnt_p --> h_c + slnt_c","officialName":"Selenite transport via proton symport (periplasm)","geneAssociation":"b2422 and b2425 and b2424 and b2423","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SO2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"so2_e <==> so2_p","officialName":"SO2 transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SO2tpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"so2_p <==> so2_c","officialName":"SO2 transport via diffusion (periplasm)","geneAssociation":"s0001","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SO3tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"so3_e <==> so3_p","officialName":"Sulfite transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SO4t2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + so4_p --> h_c + so4_c","officialName":"Sulfate transport in via proton symport (periplasm to cytoplasm)","geneAssociation":"b1206","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"SO4tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"so4_e <==> so4_p","officialName":"Sulfate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SOTA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"akg_c + sucorn_c --> glu__L_c + sucgsa_c","officialName":"Succinylornithine transaminase","geneAssociation":"b1748","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"SPMDAT1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + spmd_c --> h_c + coa_c + N1aspmd_c","officialName":"Spermidine 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{"abbreviation":"SPMDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"spmd_e <==> spmd_p","officialName":"Spermidine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SPMS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"ametam_c + ptrc_c --> h_c + 5mta_c + spmd_c","officialName":"Spermidine synthase","geneAssociation":"b0121","subsystem":"Arginine and Proline Metabolism"} {"abbreviation":"SPODM","lowbnd":0,"uppbnd":0,"obj_coef":0,"equation":"(2) h_c + (2) o2s_c --> o2_c + h2o2_c","officialName":"Superoxide dismutase","geneAssociation":"b3908 or b1656","subsystem":"Unassigned"} {"abbreviation":"SPODMpp","lowbnd":0,"uppbnd":0,"obj_coef":0,"equation":"(2) h_p + (2) o2s_p --> h2o2_p + o2_p","officialName":"Superoxide dismutase","geneAssociation":"b1646","subsystem":"Unassigned"} {"abbreviation":"SSALx","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c 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{"abbreviation":"SUCBZS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"2shchc_c --> h2o_c + sucbz_c","officialName":"O-succinylbenzoate-CoA synthase","geneAssociation":"b2261","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"SUCCt2_2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_p + succ_p --> (2) h_c + succ_c","officialName":"Succinate transport via proton symport (2 H) (periplasm)","geneAssociation":"b3528","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SUCCt2_3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(3) h_p + succ_p --> (3) h_c + succ_c","officialName":"Succintate transport via proton symport (3 H) (periplasm)","geneAssociation":"b4123 or b4138","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SUCCt3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + succ_c --> h_c + succ_p","officialName":"Succinate transport out via proton antiport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SUCCtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"succ_e <==> succ_p","officialName":"Succinate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SUCDi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"q8_c + succ_c --> fum_c + q8h2_c","officialName":"Succinate dehydrogenase (irreversible)","geneAssociation":"b0721 and b0722 and b0723 and b0724","subsystem":"Oxidative Phosphorylation"} {"abbreviation":"SUCFUMtpp","lowbnd":0,"uppbnd":0,"obj_coef":0,"equation":"succ_c + fum_p --> fum_c + succ_p","officialName":"Succinate:fumarate antiporter (periplasm)","geneAssociation":"b4123 or b0621 or b4138","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SUCMALtpp","lowbnd":0,"uppbnd":0,"obj_coef":0,"equation":"succ_c + mal__L_p --> succ_p + mal__L_c","officialName":"Succinate:malate antiporter 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suc6p_c","officialName":"Sucrose transport via PEP:Pyr (periplasm)","geneAssociation":"b2417 and b2429 and b2415 and b2416","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SULFACabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + sulfac_p --> adp_c + h_c + pi_c + sulfac_c","officialName":"Sulfoacetate transport via ABC system (periplasm)","geneAssociation":"b0936 and b0933 and b0934","subsystem":"Transport, Inner Membrane"} {"abbreviation":"SULFACtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"sulfac_e <==> sulfac_p","officialName":"Sulfoaceate transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"SULR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(5) h_c + (3) nadph_c + so3_c --> (3) h2o_c + (3) nadp_c + h2s_c","officialName":"Sulfite reductase (NADPH2)","geneAssociation":"b2763 and b2764","subsystem":"Cysteine Metabolism"} {"abbreviation":"SULabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + so4_p --> adp_c + h_c + pi_c + so4_c","officialName":"Sulfate transport via ABC system (periplasm)","geneAssociation":"(b2422 and b2425 and b2424 and b2423) or (b0763 and b0764 and b0765) or (b2422 and b2424 and b2423 and b3917)","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"T2DECAI","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tdec2eACP_c <==> cdec3eACP_c","officialName":"Trans-2-decenoyl-ACP isomerase","geneAssociation":"b0954","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"TAGURr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + altrn_c <==> h_c + nadh_c + tagur_c","officialName":"Tagaturonate reductase","geneAssociation":"b1521","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"TALA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"g3p_c + s7p_c <==> f6p_c + e4p_c","officialName":"Transaldolase","geneAssociation":"b2464 or b0008","subsystem":"Pentose Phosphate Pathway"} {"abbreviation":"TARTD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"tartr__L_c --> h2o_c + oaa_c","officialName":"L(+)-tartrate dehydratase","geneAssociation":"b3061 and b3062","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"TARTRDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tartr__D_e <==> tartr__D_p","officialName":"D-tartrate transport via diffusion (extracellular to periplasm)","geneAssociation":"b1377 or b2215 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TARTRt7pp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"succ_c + tartr__L_p <==> succ_p + tartr__L_c","officialName":"Tartrate/succinate antiporter (periplasm)","geneAssociation":"b3063","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TARTRtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tartr__L_e <==> tartr__L_p","officialName":"Tartrate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TARTt2_3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(3) h_p + tartr__D_p --> (3) h_c + tartr__D_c","officialName":"D-tartrate transport via proton symport (3 H) (periplasm)","geneAssociation":"b4123","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TAUDO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"o2_c + akg_c + taur_c --> h_c + co2_c + succ_c + so3_c + aacald_c","officialName":"Taurine dioxygenase","geneAssociation":"b0368","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"TAURabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + taur_p --> adp_c + h_c + pi_c + taur_c","officialName":"Taurine transport via ABC system (periplasm)","geneAssociation":"b0365 and b0366 and b0367","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TAURtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"taur_e <==> taur_p","officialName":"Taurine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TCYNTtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tcynt_e <==> tcynt_p","officialName":"Thiocyanate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TDP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + thmpp_c --> h_c + pi_c + thmmp_c","officialName":"Thiamin pyrophosphatase","geneAssociation":"b1134","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"TDPADGAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"accoa_c + dtdp4addg_c --> h_c + coa_c + dtdp4aaddg_c","officialName":"DTDP-4-amino-4,6-dideoxy-D-glucose 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b2041","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"TDSK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + lipidAds_c --> adp_c + h_c + lipidA_c","officialName":"Tetraacyldisaccharide 4'kinase","geneAssociation":"b0915","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"TDSR1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dsbcox_p + dsbdrd_c --> dsbcrd_p + dsbdox_c","officialName":"Thiol:disulfide reductase (DsbC)","geneAssociation":"b2893 and b4136","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TDSR2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"dsbdrd_c + dsbgox_p --> dsbdox_c + dsbgrd_p","officialName":"Thiol:disulfide reductase (DsbG)","geneAssociation":"b4136 and b0604","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TGBPA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tagdp__D_c <==> g3p_c + dhap_c","officialName":"Tagatose-bisphosphate aldolase","geneAssociation":"(b3132 and b3137) or (b2095 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b3781) or (b2480 and b2582) or b1710","subsystem":"Unassigned"} {"abbreviation":"THMDt2pp_copy1","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + thymd_p --> h_c + thymd_c","officialName":"Thymidine transport in via proton symport (periplasm)","geneAssociation":"b2393 or b2964","subsystem":"Transport, Inner Membrane"} {"abbreviation":"THMDt2pp_copy2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + thymd_p <==> h_c + thymd_c","officialName":"Thymidine transport in via proton symport (periplasm)","geneAssociation":"b2406","subsystem":"Transport, Inner Membrane"} {"abbreviation":"THMDtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"thymd_e <==> thymd_p","officialName":"Thymidine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"THMabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + thm_p --> adp_c + h_c + pi_c + thm_c","officialName":"Thiamine transport via ABC system (periplasm)","geneAssociation":"b0068 and b0067 and b0066","subsystem":"Transport, Inner Membrane"} {"abbreviation":"THMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"thm_e <==> thm_p","officialName":"Thiamine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"THRA","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"thr__L_c --> acald_c + gly_c","officialName":"Threonine aldolase","geneAssociation":"b2551 or b0870","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"THRA2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"athr__L_c --> acald_c + gly_c","officialName":"L-allo-Threonine Aldolase","geneAssociation":"b2551 or b0870","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"THRD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + thr__L_c --> h_c + nadh_c + 2aobut_c","officialName":"L-threonine dehydrogenase","geneAssociation":"b3616","subsystem":"Glycine and Serine Metabolism"} {"abbreviation":"THRD_L","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"thr__L_c --> nh4_c + 2obut_c","officialName":"L-threonine deaminase","geneAssociation":"b3117 or b3772","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"THRPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"thrp_e <==> thrp_p","officialName":"Phospho-L-threonine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"THRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + phom_c --> pi_c + thr__L_c","officialName":"Threonine synthase","geneAssociation":"b0004","subsystem":"Threonine and Lysine Metabolism"} {"abbreviation":"THRTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + thr__L_c + trnathr_c --> amp_c + ppi_c + 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{"abbreviation":"THRt4pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"na1_p + thr__L_p --> na1_c + thr__L_c","officialName":"L-threonine via sodium symport (periplasm)","geneAssociation":"b3089","subsystem":"Transport, Inner Membrane"} {"abbreviation":"THRtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"thr__L_e <==> thr__L_p","officialName":"L-threonine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"THYMt3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + thym_c --> h_c + thym_p","officialName":"Thymine transport out via proton antiport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"THYMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"thym_e <==> thym_p","officialName":"Thymine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or 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{"abbreviation":"TMDPP","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"pi_c + thymd_c <==> 2dr1p_c + thym_c","officialName":"Thymidine phosphorylase","geneAssociation":"b4382","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"TMDS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"mlthf_c + dump_c --> dhf_c + dtmp_c","officialName":"Thymidylate synthase","geneAssociation":"b2827","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"TMK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + thm_c --> adp_c + h_c + thmmp_c","officialName":"Thiamine kinase","geneAssociation":"b1106","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"TMPK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + thmmp_c --> adp_c + thmpp_c","officialName":"Thiamine-phosphate kinase","geneAssociation":"b0417","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"TMPPP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + 2mahmp_c + 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{"abbreviation":"TRPt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + trp__L_p <==> h_c + trp__L_c","officialName":"L-tryptophan reversible transport via proton symport (periplasm)","geneAssociation":"b3161 or b3709 or b1473 or b0112","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TRPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"trp__L_e <==> trp__L_p","officialName":"L-tryptophan transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TRSARr","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadh_c + 2h3oppan_c <==> nad_c + glyc__R_c","officialName":"Tartronate semialdehyde reductase","geneAssociation":"b0509 or b3125","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"TSULabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + tsul_p --> adp_c + h_c + pi_c + tsul_c","officialName":"Thiosulfate 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{"abbreviation":"TUNGStex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tungs_e <==> tungs_p","officialName":"Tungstate transport via diffusion (extracellular to periplasm)","geneAssociation":"b2215 or b1377 or b0241 or b0929","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TYMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tym_e <==> tym_p","officialName":"Tyramine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"TYRL","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nadph_c + amet_c + tyr__L_c --> h_c + nadp_c + dad_5_c + met__L_c + 4crsol_c + dhgly_c","officialName":"Tyrosine lyase","geneAssociation":"b3991","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"TYROXDApp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + o2_p + tym_p --> h2o2_p + nh4_p + 4hoxpacd_p","officialName":"Tyramine:oxygen 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{"abbreviation":"TYRTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + tyr__L_c + trnatyr_c --> amp_c + ppi_c + tyrtrna_c","officialName":"Tyrosyl-tRNA synthetase","geneAssociation":"b1637","subsystem":"tRNA Charging"} {"abbreviation":"TYRt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + tyr__L_p <==> h_c + tyr__L_c","officialName":"L-tyrosine reversible transport via proton symport (periplasm)","geneAssociation":"b1473 or b1907 or b0112 or b0576","subsystem":"Transport, Inner Membrane"} {"abbreviation":"TYRtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"tyr__L_e <==> tyr__L_p","officialName":"L-tyrosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ThDPAT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"adp_c + h_c + thmpp_c --> pi_c + athtp_c","officialName":"ThDP adenylyl 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{"abbreviation":"UACGAMPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + uacgam_p --> (2) h_p + acgam1p_p + ump_p","officialName":"UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm)","geneAssociation":"b0480","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"UACGAMtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"uacgam_e <==> uacgam_p","officialName":"UDP-N-acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"UACMAMO","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + (2) nad_c + uacmam_c --> (3) h_c + (2) nadh_c + uacmamu_c","officialName":"UDP-N-acetyl-D-mannosamine oxidoreductase","geneAssociation":"b3787","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UAG2E","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"uacgam_c <==> uacmam_c","officialName":"UDP-N-acetylglucosamine 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uaagmda_c","officialName":"UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase","geneAssociation":"b0090","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UAMAGS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + glu__D_c + uama_c --> adp_c + h_c + pi_c + uamag_c","officialName":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase","geneAssociation":"b0088","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UAMAS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + ala__L_c + uamr_c --> adp_c + h_c + pi_c + uama_c","officialName":"UDP-N-acetylmuramoyl-L-alanine synthetase","geneAssociation":"b0091","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UAPGR","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_c + nadph_c + uaccg_c --> nadp_c + uamr_c","officialName":"UDP-N-acetylenolpyruvoylglucosamine reductase","geneAssociation":"b3972","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UDCPDP","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + udcpdp_c --> h_c + pi_c + udcpp_c","officialName":"Undecaprenyl-diphosphatase","geneAssociation":"b0841 or b1278 or b3057","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UDCPDPS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(8) ipdp_c + frdp_c --> (8) ppi_c + udcpdp_c","officialName":"Undecaprenyl diphosphate synthase","geneAssociation":"b0174","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"UDCPDPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + udcpdp_p --> h_p + pi_p + udcpp_p","officialName":"Undecaprenyl-diphosphatase (periplasm)","geneAssociation":"b1278 or b3057 or b0841","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UDCPPtppi","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"udcpp_p --> udcpp_c","officialName":"Undecaprenyl phosphate transport (cytoplasm to periplasm)","geneAssociation":"","subsystem":"Lipopolysaccharide 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Metabolism"} {"abbreviation":"UDPGALtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"udpgal_e <==> udpgal_p","officialName":"UDPgalactose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"UDPGD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + (2) nad_c + udpg_c --> (3) h_c + (2) nadh_c + udpglcur_c","officialName":"UDPglucose 6-dehydrogenase","geneAssociation":"b2028","subsystem":"Cell Envelope Biosynthesis"} {"abbreviation":"UDPGDC","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"nad_c + udpglcur_c --> nadh_c + co2_c + udpLa4o_c","officialName":"UDP-glucuronate C-4'' decarboxylase","geneAssociation":"b2255","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"UDPGLCURtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"udpglcur_e <==> udpglcur_p","officialName":"UDP-D-glucuronate transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"UDPGPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + udpg_p --> (2) h_p + g1p_p + ump_p","officialName":"UDPglucose pyrophosphohydrolase","geneAssociation":"b0480","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"UDPGtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"udpg_e <==> udpg_p","officialName":"UDPglucose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"UDPKAAT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glu__L_c + udpLa4o_c <==> akg_c + udpLa4n_c","officialName":"UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase","geneAssociation":"b2253","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"UGLCURPpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_p + udpglcur_p --> (2) h_p + glcur1p_p + ump_p","officialName":"UDP-D-glucuronate pyrophosphohydrolase (periplasm)","geneAssociation":"b0480","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"UGLT","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"gal1p_c + udpg_c <==> g1p_c + udpgal_c","officialName":"UDPglucose--hexose-1-phosphate uridylyltransferase","geneAssociation":"b0758","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"UGLYCH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + (2) h_c + urdglyc_c --> (2) nh4_c + co2_c + glx_c","officialName":"Ureidoglycolate hydrolase","geneAssociation":"b0505","subsystem":"Nitrogen Metabolism"} {"abbreviation":"UGMDDS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + alaala_c + ugmd_c --> adp_c + h_c + pi_c + ugmda_c","officialName":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine 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{"abbreviation":"UMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"ump_e <==> ump_p","officialName":"UMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0929 or b1377 or b2215 or b0241","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"UPLA4FNF","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + uLa4fn_c --> for_c + uLa4n_c","officialName":"Undecaprenyl phosphate-L-Ara4FN formylase","geneAssociation":"b2256","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"UPLA4FNT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"udcpp_c + udpLa4fn_c --> udp_c + uLa4fn_c","officialName":"Undecaprenyl phosphate-L-Ara4FN transferase","geneAssociation":"b2254","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"UPP3MT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) amet_c + uppg3_c --> h_c + (2) ahcys_c + dscl_c","officialName":"Uroporphyrinogen methyltransferase","geneAssociation":"b3803 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periplasm)","geneAssociation":"b0411","subsystem":"Transport, Outer Membrane"} {"abbreviation":"USHD","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + u23ga_c --> (2) h_c + ump_c + lipidX_c","officialName":"UDP-sugar hydrolase","geneAssociation":"b0524","subsystem":"Lipopolysaccharide Biosynthesis / Recycling"} {"abbreviation":"VALTA","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"akg_c + val__L_c <==> glu__L_c + 3mob_c","officialName":"Valine transaminase","geneAssociation":"b3770","subsystem":"Valine, Leucine, and Isoleucine Metabolism"} {"abbreviation":"VALTRS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + val__L_c + trnaval_c --> amp_c + ppi_c + valtrna_c","officialName":"Valyl-tRNA synthetase","geneAssociation":"b4258","subsystem":"tRNA Charging"} {"abbreviation":"VALabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + val__L_p --> adp_c + h_c + pi_c + val__L_c","officialName":"L-valine transport via ABC system 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{"abbreviation":"WCOS","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"(2) h_c + mptamp_c + tungs_c --> h2o_c + amp_c + cu2_c + wco_c","officialName":"Tungsten pterin cofactor synthase","geneAssociation":"b0827","subsystem":"Cofactor and Prosthetic Group Biosynthesis"} {"abbreviation":"X5PL3E","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"xu5p__L_c --> ru5p__L_c","officialName":"L-xylulose 5-phosphate 3-epimerase","geneAssociation":"b4197","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"XAND","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + nad_c + xan_c --> h_c + nadh_c + urate_c","officialName":"Xanthine dehydrogenase","geneAssociation":"b2866 and b2867 and b2868","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"XANt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + xan_p --> h_c + xan_c","officialName":"Xanthine transport in via proton symport (periplasm)","geneAssociation":"b3654 or b2882","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XANtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xan_e <==> xan_p","officialName":"Xanthine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"XANtpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xan_p <==> xan_c","officialName":"Xanthine reversible transport (periplasm)","geneAssociation":"","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XMPtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xmp_e <==> xmp_p","officialName":"XMP transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"XPPT","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"prpp_c + xan_c --> ppi_c + xmp_c","officialName":"Xanthine phosphoribosyltransferase","geneAssociation":"b0238","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"XTSNH","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h2o_c + xtsn_c --> rib__D_c + xan_c","officialName":"Xanthosine hydrolase","geneAssociation":"b0030","subsystem":"Nucleotide Salvage Pathway"} {"abbreviation":"XTSNt2rpp","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"h_p + xtsn_p <==> h_c + xtsn_c","officialName":"Xanthosine transport via proton symport (periplasm)","geneAssociation":"b2406","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XTSNtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xtsn_e <==> xtsn_p","officialName":"Xanthosine transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"XYLI1","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xyl__D_c <==> xylu__D_c","officialName":"Xylose isomerase","geneAssociation":"b3565","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"XYLI2","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"glc__D_c <==> fru_c","officialName":"Xylose isomerase","geneAssociation":"b3565","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"XYLK","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + xylu__D_c --> adp_c + h_c + xu5p__D_c","officialName":"Xylulokinase","geneAssociation":"b0063 or b3564","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"XYLK2","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + xylu__L_c --> adp_c + h_c + xu5p__L_c","officialName":"L-xylulokinase","geneAssociation":"b0063 or b3580","subsystem":"Alternate Carbon Metabolism"} {"abbreviation":"XYLUt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + xylu__L_p --> h_c + xylu__L_c","officialName":"L-xylulose transport in via proton symport (periplasm)","geneAssociation":"b3577 and b3578 and b3579","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XYLUtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xylu__L_e <==> xylu__L_p","officialName":"L-xylulose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"XYLabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + xyl__D_p --> adp_c + h_c + pi_c + xyl__D_c","officialName":"D-xylose transport via ABC system (periplasm)","geneAssociation":"b3566 and b3567 and b3568","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XYLt2pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + xyl__D_p --> h_c + xyl__D_c","officialName":"D-xylose transport in via proton symport (periplasm)","geneAssociation":"b4031","subsystem":"Transport, Inner Membrane"} {"abbreviation":"XYLtex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"xyl__D_e <==> xyl__D_p","officialName":"D-xylose transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"} {"abbreviation":"ZN2abcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + zn2_c --> adp_c + h_c + pi_c + zn2_p","officialName":"Zinc (Zn+2) ABC transporter, efflux (periplasm)","geneAssociation":"b3469","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"ZN2t3pp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"h_p + zn2_c --> h_c + zn2_p","officialName":"Zinc (Zn+2) transport out via proton antiport (periplasm)","geneAssociation":"b3915 or b0752","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"ZN2tpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"zn2_p --> zn2_c","officialName":"Zinc transport in via permease (no H+)","geneAssociation":"b3040","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"ZNabcpp","lowbnd":0,"uppbnd":1000,"obj_coef":0,"equation":"atp_c + h2o_c + zn2_p --> adp_c + h_c + pi_c + zn2_c","officialName":"Zinc (Zn+2) transport via ABC system (periplasm)","geneAssociation":"b1857 and b1859 and b1858","subsystem":"Inorganic Ion Transport and Metabolism"} {"abbreviation":"Zn2tex","lowbnd":-1000,"uppbnd":1000,"obj_coef":0,"equation":"zn2_e <==> zn2_p","officialName":"Zinc (Zn+2) transport via diffusion (extracellular to periplasm)","geneAssociation":"b0241 or b0929 or b1377 or b2215","subsystem":"Transport, Outer Membrane Porin"}